Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0554 ATGATTCTAAACGTATCACCTCCTTCCTTCTCTCGCACACTTCCTCACCCTTCAATTAAACTCTCTGAAACTTGTTCCAACCGCAACACCAACGCTTCTTATCCTCTTCTCATTTTCACAACTTCATCGTTTCCTAAACCATTCAAATTTCTCAATCTCAAAGCTTCCGTTAGCGAAAGCCAAAATGAAACTTCTAATTCCAACTTATTGGATCAACAGTTTCTTCTCCGAATTGCTGCAACCGCTAAAGACGCTGACGAGGCATTGCAGTTAATTGCTGATAACTCTTCCACTAACGGTGGTATAGTTTCTACCGCTGATTGTTGCTCTATTATTTCCAACGCGCTTGATCGGAATAATCACCAACTTGCTTTGTCCATTTTCTATGCCATGCGCTCCACTTTTCATCAAGTTGGTGAGACTGGCCCTTTAGTCGAGAGATGGAAGTGGTCAAGGCCAAATGCACGCGTTTATACAATGTTGATTCAGGGGTTGGCTGCATCTTTGAGGGTTTCAGATGCTCTTAGTGTGGTTAAATATATCTGTGAAGTGGGTGTCTCTCCTTCTGAGGAGGTTCCCTTTGGGAAGATAGTGAGGTGTCCTAGTTGTCAGATAGCTGTTGCAGTTGCACAGCCACAGCAAGGTATTCAGATAGTATCTTGTGCAAAGTGCCGCTACCAATACGAACTTGTTTCAGGAGACATAGTCAGCATTCAATCAGAAGAAATCAGCATGGACGTTGCAGCATGGGAAAAGGGGTTAAGATTCCTGAAACTGATGAAGCAAGGCATTCCTTCTGCTGTTCACTCTATTGTGGTGCAGACCCCTTCTGGTATGGCTCGAACTCACAGATTTGCAACTGAGACAGTTGATCTACCAGCACAAGAAGGCGAAAGGGTAACTGTTGCTGTGGCAGCTCCATCAAATGTATATAGAAAGTTGGGGCCCTTTAAAGTAAGTTCAAGATCCCCGGATTTATATCCTGGTGAGGCTATGTGCATAACAAACCACAAAGATGGACGGGAATCACGTCTTGTAAGAGCCCCTAGAAAAGATGAAAATTCATCATTACTAAAACCTTCCATTCTCTTTCCACTTATTGCTTTGTTTGCCACCGGTGATGCTGCCTCTGGACTTATTGACCCCAGCCTGCCTCAATTCCTATCAGTTGCTGCAGTTTCATCTCTTGCTGTTGGCTCTGCATTGAATTCCTTTGTTTTGCCCAAGTTTAATCAGCTTCCGCAAAGATCAGTGGAAGTAACTGCTATCAAACAACGTCTTTTATCTCAATATGACATGCTTCAGTCGCGCATCAATGACCTAAAAGAAGCAGCTGAAAAAGAGGTTTGGATGTTAGCCCGGATGTGCCAACTTGAGAATAAAATTTCAGCTGTTGGAGAACCTTCTTATCGGGCTCGGATAAGTAAAGTCAAAAGGGTCCGAGAGAGCCTGCAAAACTCCCTCCAGGGACGAATTGAACTGATTGCTAGCTATGCTAGGATTTCCTCAATGATTGAAATTGAAGTGGAGATGGAAACTGATGTTCTGGCTGCTGGAACTACTAGTGATGTGGATGGTTTCACTGATCAGATAGAGCAAATCATGGAGCTTGAAAATTTAGAGGAGAGATGGAAAATGCAAGCAGAAGCAAATGATGAGGCCGAAAGACTTCTTAGCTCCCAACCAGTCCCTTTGGACGAAGTTTAA 1707 0.4359 MILNVSPPSFSRTLPHPSIKLSETCSNRNTNASYPLLIFTTSSFPKPFKFLNLKASVSESQNETSNSNLLDQQFLLRIAATAKDADEALQLIADNSSTNGGIVSTADCCSIISNALDRNNHQLALSIFYAMRSTFHQVGETGPLVERWKWSRPNARVYTMLIQGLAASLRVSDALSVVKYICEVGVSPSEEVPFGKIVRCPSCQIAVAVAQPQQGIQIVSCAKCRYQYELVSGDIVSIQSEEISMDVAAWEKGLRFLKLMKQGIPSAVHSIVVQTPSGMARTHRFATETVDLPAQEGERVTVAVAAPSNVYRKLGPFKVSSRSPDLYPGEAMCITNHKDGRESRLVRAPRKDENSSLLKPSILFPLIALFATGDAASGLIDPSLPQFLSVAAVSSLAVGSALNSFVLPKFNQLPQRSVEVTAIKQRLLSQYDMLQSRINDLKEAAEKEVWMLARMCQLENKISAVGEPSYRARISKVKRVRESLQNSLQGRIELIASYARISSMIEIEVEMETDVLAAGTTSDVDGFTDQIEQIMELENLEERWKMQAEANDEAERLLSSQPVPLDEV* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0554 568 Coils Coil 424 444 - -
Tpr3g0554 568 Gene3D Tetratricopeptide repeat domain 72 265 IPR011990 GO:0005515
Tpr3g0554 568 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 567 - -
Tpr3g0554 568 Coils Coil 537 557 - -
Tpr3g0554 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 154 188 IPR002885 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0554 - - gmx:100781803 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0554 3 5514361 5520097 Tpr3g0554 3 5514361 5520097 ECH