Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0548 ATGGGGTGTACTTGCACCAAAGCGCGACTTCGGCATGAAGATCCGGCAATTCTAGCTGAACAAACTTATTTTAATATTTCTGAAATTAAAGCTTTATATGATCTGTTCAAGAAATTAAGCAGCTCTATGGTCAATGATGGACTAATTAGCAAAGAAGAGTTTCAGCTTGGCTTATTTGGAAGCAGCAAGAAGCAGAACCTCTTCGGCGACAGGGTGTTCGATATATTTGACTCAAAAAAAGACGGTATGATAGATTTTGGAGAGTTTGTTAAAGCTTTAAGCGTCTTCCATCCAGCAGCGCCTCAACCACAAAAGGCAGCTTTTGCATTTCGACTCTACGATATATCGCAAAAAGGCTTTATCGAACGAGACGAGGTAAGAGAGATGATACTGGCACTCCTAAGAGAATCTAATTTGGTTCTTTCTCAAGATATAATTGAGCTCATAATTGATAAGGCATTTAAAGAAGCTGATTTAAAAGGAGATGGAAGGATTGATCCAGAAGAGTGGGAAAAGTTTGTTGCTCAAAATCCATCCTTACTAAGGAATATGACTATACCATATTTGAAGGATCTAAATGTGCAGTTTCCTGGTTTTGAACAAATATCAGACATTGAAGATTAG 624 0.3798 MGCTCTKARLRHEDPAILAEQTYFNISEIKALYDLFKKLSSSMVNDGLISKEEFQLGLFGSSKKQNLFGDRVFDIFDSKKDGMIDFGEFVKALSVFHPAAPQPQKAAFAFRLYDISQKGFIERDEVREMILALLRESNLVLSQDIIELIIDKAFKEADLKGDGRIDPEEWEKFVAQNPSLLRNMTIPYLKDLNVQFPGFEQISDIED* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0548 207 CDD EFh 105 175 IPR002048 GO:0005509
Tpr3g0548 207 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Tpr3g0548 207 PRINTS Recoverin family signature 10 24 - -
Tpr3g0548 207 PRINTS Recoverin family signature 72 93 - -
Tpr3g0548 207 PRINTS Recoverin family signature 119 137 - -
Tpr3g0548 207 PRINTS Recoverin family signature 165 185 - -
Tpr3g0548 207 Pfam EF hand 70 90 IPR002048 GO:0005509
Tpr3g0548 207 Pfam EF-hand domain pair 105 173 IPR002048 GO:0005509
Tpr3g0548 207 PANTHER CALCINEURIN B 1 206 IPR045198 GO:0005509|GO:0019722|GO:0019900
Tpr3g0548 207 SUPERFAMILY EF-hand 16 198 IPR011992 -
Tpr3g0548 207 PANTHER CALCINEURIN B-LIKE PROTEIN 5 1 206 - -
Tpr3g0548 207 ProSiteProfiles EF-hand calcium-binding domain profile. 70 99 IPR002048 GO:0005509
Tpr3g0548 207 Gene3D - 14 207 - -
Tpr3g0548 207 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Tpr3g0548 207 SMART efh_1 149 177 IPR002048 GO:0005509
Tpr3g0548 207 SMART efh_1 68 96 IPR002048 GO:0005509
Tpr3g0548 207 SMART efh_1 105 133 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0548 Tpr-Chr3 5474293 5476280 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0548 22 199 EF-hand Containing Proteins AT5G24270 60.674 6.47e-83 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0548 K06268 - gmx:100808628 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0548 3 5474293 5476280 Tpr3g0548 3 5474293 5476280 ECH