Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0547 ATGAGCTGTTTTTGCTTGACGAAAGGAAAACCGAAAACTAAGCACGAACAAACTTCTATTCTTGTTCAGGAAACATCCTTCACTGTAAATGAGGTTGAGGCTTTATTTGACTTGTTTAAGAAACTAAGCAGTTCAATTATTGATGATGGCTGCATTCACAAGGAGGAGTTCCAACTTGCACTTTTCAGAAATAGTAGCAAGCAGAATCTACTTGCAAGCAGGGTATTCGATATGTTTGATATTAAGCGTAATGGAGTAATTGAATTTGGAGAATTCGTTCGCTCACTAAGCATCTTTCATCCAAGGGCATCTGAAGACAAAAAAATTGAATTTGCATTTAAATTGTTTGACCTTGGAAAGACTGGATACATTGAGCACAGTGCGTTGAAGGAGATGGTTTTGGCTACTTTGACTGAATCAGATGTTACAGTTTCAAATGATATTGTTGAATCAATTGTGGATAAGACAATGAAGGAGGTTGATTTAAAAGGAGATGGGAAAATTGATATGGAAGAGTGGAAAGAATATGCATTAAAAACACCTTCACTTCTTAAGATGATGACTCTGCCATATCTAAAGGATATAACTATGGCATTTCCCAGCTTTGTTTTGCACACGGAGGCGGAAGACTAG 633 0.3697 MSCFCLTKGKPKTKHEQTSILVQETSFTVNEVEALFDLFKKLSSSIIDDGCIHKEEFQLALFRNSSKQNLLASRVFDMFDIKRNGVIEFGEFVRSLSIFHPRASEDKKIEFAFKLFDLGKTGYIEHSALKEMVLATLTESDVTVSNDIVESIVDKTMKEVDLKGDGKIDMEEWKEYALKTPSLLKMMTLPYLKDITMAFPSFVLHTEAED* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0547 210 CDD EFh 108 175 IPR002048 GO:0005509
Tpr3g0547 210 PRINTS Recoverin family signature 13 27 - -
Tpr3g0547 210 PRINTS Recoverin family signature 75 96 - -
Tpr3g0547 210 PRINTS Recoverin family signature 122 140 - -
Tpr3g0547 210 PRINTS Recoverin family signature 168 188 - -
Tpr3g0547 210 SUPERFAMILY EF-hand 20 203 IPR011992 -
Tpr3g0547 210 Pfam EF-hand domain pair 107 175 IPR002048 GO:0005509
Tpr3g0547 210 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
Tpr3g0547 210 PANTHER CALCINEURIN B-LIKE PROTEIN 8 1 209 - -
Tpr3g0547 210 Pfam EF-hand domain pair 49 94 IPR002048 GO:0005509
Tpr3g0547 210 Gene3D - 18 210 - -
Tpr3g0547 210 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Tpr3g0547 210 PANTHER CALCINEURIN B 1 209 IPR045198 GO:0005509|GO:0019722|GO:0019900
Tpr3g0547 210 SMART efh_1 152 180 IPR002048 GO:0005509
Tpr3g0547 210 SMART efh_1 108 136 IPR002048 GO:0005509
Tpr3g0547 210 SMART efh_1 71 99 IPR002048 GO:0005509
Tpr3g0547 210 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0547 Tpr-Chr3 5470965 5474157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0547 25 210 EF-hand Containing Proteins AT5G24270 63.441 4.22e-84 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0547 K06268 - cit:102629470 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0547 3 5470965 5474157 Tpr3g0547 3 5470965 5474157 ECH