Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0536 ATGGTATGCTTTGGTATTTCTAGTACATGTTCTTTTGAGGTATCTTTGGTTAAGTATGAAGGTCTTAGATTGACTCAAAGAATGCAAATGTATTCAGTTGCATGCATGCCAAAAAGATTCATTTTAGCTTCTGGCAAGAAACGCCAAACAATCAAAGCAATGGCTTCTCCAACTACAGCAGCACCTAAAAGAGAGAAAGATCCAAAAAAGAGAGTAGTTATAACAGGAATGGGTCTTGTATCAGTCTTTGGAAGTGACATAGATACATTTTACAACAAACTTTTAGAGGGAGAAAGTGGGATAAGCCTAATAGATAGGTTTGATGCTTCAAGCTTACCTGTCCGTTTTGGCGGTCAGATACGCGATTTCTCTACAAAAGGTTACATCAATGAAGAGAATGACCGGCACCTCGATGATTGCTTGAAGTATTGTTTAGTTTCAGGCAAGAGAGCACTTGAAGATGCTAATCTTGGATATGAAGTCCTTAAAAATATGGACAAAACAAGAATAGGAGTTATAGTGGGAACAGGACTGGGAGGTGTAGCCACTTTTAGCAATGCTGTTCATGCTCTCATACAAAAGGGACCTAGTGAAATTTCTCCATTTTTCATTCCCCATTCCATCCCCAACATGAGTTCTGCTTTGTTGGCTATAGAAACTGGCCTAACAGGACCAAATTATTCCATTTCTACTGCTTGTGCAACAGCAAATTACTGCTTTTGTGCTGCTTCTCATCACATTAGAAGTGGTGAAGTAGATATTATGGTGGTTGGTGGTACCGAAGCTTCAATTATACCTTCTGGTGTTGGAGGATTCATTGCTTGCAGGGCTTTGTCTCAGAGGAATGAAGAACCTATGAAGGCTTCAAGACCATGGGACAAAAATCGTGATGGTTTTGTTATCGGTGAAGGCTCTGGTGTCCTGATAATGGAGAGCTTGGAGAGTGCAACAAAGAGGGGAGCAAGAATACTTGCTGAATACTTGGGTGGTGCCATAACATGTGATGCTCATCATATGACTGATCCAAGGTCTGATGGATTTGGAGTTTCATCTTGCATAAAAAAGAGTTTAGAAGATGCCGGGGTTTCCGTTGAAGAGGTGAACTATGTGAATGCTCATGCCACATCAACACTAGCTGGTGACTTGGCTGAGGTTAATGCAATCAAAAAGGTTTTTAAGAACACATCAGAATTGAAAATGAATGGGACAAAGTCAATGATTGGCCACTGTCTTGGTGCTGCTGGTGGTTTGGAAGCTATAGCAACTATCAAAGCAATAACAACTGGCTGGTTGCATCCAACTATTAACCAAGATAACTTGGAGGATGATGTTACAATTGATACTGTTCCTAATGTTAAGAAAAAGCATGAAGTTAATGTTGCTATCTCCAATTCATTTGGGTTTGGTGGACACAATTCAGTAGTTGTCTTTGCCCCTTACATGCCCTAA 1449 0.403 MVCFGISSTCSFEVSLVKYEGLRLTQRMQMYSVACMPKRFILASGKKRQTIKAMASPTTAAPKREKDPKKRVVITGMGLVSVFGSDIDTFYNKLLEGESGISLIDRFDASSLPVRFGGQIRDFSTKGYINEENDRHLDDCLKYCLVSGKRALEDANLGYEVLKNMDKTRIGVIVGTGLGGVATFSNAVHALIQKGPSEISPFFIPHSIPNMSSALLAIETGLTGPNYSISTACATANYCFCAASHHIRSGEVDIMVVGGTEASIIPSGVGGFIACRALSQRNEEPMKASRPWDKNRDGFVIGEGSGVLIMESLESATKRGARILAEYLGGAITCDAHHMTDPRSDGFGVSSCIKKSLEDAGVSVEEVNYVNAHATSTLAGDLAEVNAIKKVFKNTSELKMNGTKSMIGHCLGAAGGLEAIATIKAITTGWLHPTINQDNLEDDVTIDTVPNVKKKHEVNVAISNSFGFGGHNSVVVFAPYMP* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0536 482 PANTHER 3-OXOACYL-(ACYL CARRIER) SYNTHASE II 34 482 - -
Tpr3g0536 482 Pfam Beta-ketoacyl synthase, N-terminal domain 70 316 IPR014030 -
Tpr3g0536 482 Pfam Beta-ketoacyl synthase, C-terminal domain 324 437 IPR014031 -
Tpr3g0536 482 SUPERFAMILY Thiolase-like 285 479 IPR016039 GO:0016746
Tpr3g0536 482 Gene3D - 42 482 IPR016039 GO:0016746
Tpr3g0536 482 SUPERFAMILY Thiolase-like 70 321 IPR016039 GO:0016746
Tpr3g0536 482 TIGRFAM fabF: beta-ketoacyl-acyl-carrier-protein synthase II 70 477 IPR017568 GO:0006633|GO:0016747
Tpr3g0536 482 ProSitePatterns Beta-ketoacyl synthases active site. 224 240 IPR018201 GO:0004315|GO:0006633
Tpr3g0536 482 CDD KAS_I_II 70 477 IPR000794 -
Tpr3g0536 482 PANTHER POLYKETIDE SYNTHASE-RELATED 34 482 IPR000794 -
Tpr3g0536 482 SMART Beta-ketoacyl synthase 72 482 IPR020841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0536 Tpr-Chr3 5391394 5395124 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0536 46 482 Acyl Lipid Metabolism Gene Families AT5G46290 70.640 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0536 K09458 - gmx:100808453 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0536 3 5391394 5395124 Tpr3g0536 3 5391394 5395124 ECH