Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0531 ATGCCTGGTCTCGTTTCCCCAGGCGGACCTCCGCCCCGTATAACTTTACCCGAAACCCCAACTCAAAGATCCGAACCATCCAAAACACCATCACCACTCCCCAAAAAACCACCCTCTCCTTCACCTTCTTCTCGCTCCAAGAAAAAAACCCCCGAAACCCCAAACAACAACACTTTACTCTCCGAAGCTTCACTCGATAACCCAGATCTAGGCCCATTCCTTCTCAAAGTAGCCCGTGACACTATCGCATCAGGCGATGGGCCTGCCAAAGCCCTCGACTACGCTATCCGTGCTTCCAAATCATTCGAACGCTGCGCCGTTGAAGGCGAGCCGAGTCTCGATTTAGCCATGAGTCTCCATGTTTTAGCTGCGATTTATTGTAGCTTAAGCCGATTCGAAGAAGCCGTTCCTGTTCTCGAACGCGCGATTCTTGTTCCTGATGTTGAACTCGGCGCCGATCATGCTCTTGCTGCTTTTTCCGGTTATATGCAGTTAGGTGATACTTTTTCGATGTTAGGTCAAGTTGATAAATCGATTTCTTGTTACGATCAAGGTCTTCAGATTCAGATCCAAACCCTAGGTGAAACCGATCCACGCGTCGGTGAAACGTGTCGGTATTTGGCCGAGGCGAATGTTCAGGCGATGCAGTTTGATAAAGCGGAGGAGCTTTGTAACAAAACGTTGGAGATTCATCGTGCTCATAGTGAACCTGCTTCTCTTGAAGAAGCTGCAGATCGGAGACTTATGGCTTTGATTTGTGAAGCTAAAGGTGATTATGAATCGGCGTTGGAGCATCTTGTTCTTGCTAGTATGGCGATGATTGCGAATGGTCAAGATAATGAAGTTGCTTCGATTGATGTAAGCATCGGAAATATTTATATGTCGTTGTGTCGATTTGATGAAGCTATATTTTCTTATCAGAAAGCACTTACTGTGTTTAAATCTTCGAAAGGAGAGAATCATCCTTCTGTTGCGTCGGTGTTTGTTCGTTTGGCTGATTTGTATCATAGGACAGGGAAGCTTCGCGAATCGAAGTCTTATTGTGAAAATGCGCTTAGAATATACTCGAAACCGGTTCCTGGAACCACTGCTGAGGAGATTGCCAGTGGTTTGACGGAAGTTTCAGCGATATTTGAATCTGTTGATGATCCTGAGGAAGCGTTGAAGCTTTTGCAAAAGGCGATGAAATTGTTGGAGGATAAACCGGGACAGCAGAGTACGATTGCTGGGATTGAAGCACGGATGGGAGTGATGTATTATATGATTGGGAAGTACGATGAAGCGAGGAAAGCTTTTGAGAGTGCTGTGTTGAAATTGAGAACTAGCGGGGAAAGGAAATCTGCGTTTTTTGGTGTTGTTTTGAATCAGATGGGTTTGGCTTGTGTGCAACTGTTTAAGATTGATGAAGCTGCTGAGTTGTTTGAGGAAGCTAGGGGAATTCTTGAAACAGAATGTGGACCTTGTCATCAAGATACTCTTGGAGTATATAGCAATCTTGCAGCAACTTATGATGCCATGGGAAGAGTTGGAGATGCAATTGAAATCTTAGAATATGTGCTGAAGTTGAGGGAAGAGAAGCTTGGAATAGCGAATCCTGATTTTGAAGATGAGAAGCGTCGCTTGGCTGAGTTACTAAAAGAAGCTGGCAAAACACGAGACAGAAAAGCAAAATCTTTGGAAAATCTTATAGATCCAAATTCAAAGAGGACAAAGAAGGAGAGTACCAAGAGGTGGCCTGGTTTGGGGTTTAGAATTTAA 1758 0.446 MPGLVSPGGPPPRITLPETPTQRSEPSKTPSPLPKKPPSPSPSSRSKKKTPETPNNNTLLSEASLDNPDLGPFLLKVARDTIASGDGPAKALDYAIRASKSFERCAVEGEPSLDLAMSLHVLAAIYCSLSRFEEAVPVLERAILVPDVELGADHALAAFSGYMQLGDTFSMLGQVDKSISCYDQGLQIQIQTLGETDPRVGETCRYLAEANVQAMQFDKAEELCNKTLEIHRAHSEPASLEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDNEVASIDVSIGNIYMSLCRFDEAIFSYQKALTVFKSSKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTAEEIASGLTEVSAIFESVDDPEEALKLLQKAMKLLEDKPGQQSTIAGIEARMGVMYYMIGKYDEARKAFESAVLKLRTSGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILETECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPNSKRTKKESTKRWPGLGFRI* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0531 585 ProSiteProfiles TPR repeat profile. 283 316 IPR019734 GO:0005515
Tpr3g0531 585 SUPERFAMILY TPR-like 88 188 IPR011990 GO:0005515
Tpr3g0531 585 MobiDBLite consensus disorder prediction 550 585 - -
Tpr3g0531 585 Gene3D Tetratricopeptide repeat domain 270 444 IPR011990 GO:0005515
Tpr3g0531 585 MobiDBLite consensus disorder prediction 43 64 - -
Tpr3g0531 585 Pfam Tetratricopeptide repeat 282 356 - -
Tpr3g0531 585 Pfam Tetratricopeptide repeat 453 525 - -
Tpr3g0531 585 MobiDBLite consensus disorder prediction 1 65 - -
Tpr3g0531 585 Gene3D Tetratricopeptide repeat domain 161 269 IPR011990 GO:0005515
Tpr3g0531 585 PANTHER - 26 584 - -
Tpr3g0531 585 SUPERFAMILY TPR-like 410 551 IPR011990 GO:0005515
Tpr3g0531 585 SMART tpr_5 493 526 IPR019734 GO:0005515
Tpr3g0531 585 SMART tpr_5 243 276 IPR019734 GO:0005515
Tpr3g0531 585 SMART tpr_5 159 192 IPR019734 GO:0005515
Tpr3g0531 585 SMART tpr_5 409 442 IPR019734 GO:0005515
Tpr3g0531 585 SMART tpr_5 116 149 IPR019734 GO:0005515
Tpr3g0531 585 SMART tpr_5 201 234 IPR019734 GO:0005515
Tpr3g0531 585 SMART tpr_5 368 401 IPR019734 GO:0005515
Tpr3g0531 585 SMART tpr_5 325 358 IPR019734 GO:0005515
Tpr3g0531 585 SMART tpr_5 283 316 IPR019734 GO:0005515
Tpr3g0531 585 SMART tpr_5 451 484 IPR019734 GO:0005515
Tpr3g0531 585 MobiDBLite consensus disorder prediction 550 579 - -
Tpr3g0531 585 Pfam MalT-like TPR region 121 270 IPR041617 -
Tpr3g0531 585 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 26 584 - -
Tpr3g0531 585 Coils Coil 534 554 - -
Tpr3g0531 585 Gene3D Tetratricopeptide repeat domain 64 160 IPR011990 GO:0005515
Tpr3g0531 585 MobiDBLite consensus disorder prediction 1 17 - -
Tpr3g0531 585 Gene3D Tetratricopeptide repeat domain 445 570 IPR011990 GO:0005515
Tpr3g0531 585 SUPERFAMILY TPR-like 158 356 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0531 Tpr-Chr3 5354420 5357717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0531 161 328 Glycosyltransferase AT3G04240 25.143 6.51e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0531 - - gmx:100815100 989.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0531 3 5354420 5357717 Tpr3g0531 3 5354420 5357717 ECH