Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0258 ATGAATGAGTTTGTGTGTGTGAGTGAAAAGTGTAACATGGGGGATAGAAAAGATGAAAATGGATCTTCTTTACAGTCACCTTTGCTTCAAATAATATCAGTGCAAAAGGATGATACAGAGGCAGTGAGAGAGCAATACAAGGAAAGGGTGGTAGAACTAGAATCAGTAAGAAGAAAAAATTTCTTTGAAGAAGTGAAGAAGCAGTTATGGCTAGCAGGGCCTTTGACATCTGCGTCTCTTTTAAATTTTGGCATACAGATTATATCTGTGATGTTTGTTGGCCACCTTGGCGAGTTGCCTCTCGCAGGTGCTTCAATGGCTACTTCTTTTACTTCTGTCACTGGCATTAGTGTATTGCTAGGAATGGCAACTGCGTTGGATACCTTGTGTGGCCAATCATATGGAGCAAAGCAGGAGCAGATGTTAGGCATACACATGCAGAGGGCCATGCTCAGTCTTATGATTGTCAGCATACCCTTAGCTATTATCTGGGCAAACACCAGTTCCATTCTGATTTTCCTTGGCCAAGATCCTGAAATATCTGAAGAAGCCGGAAAATTTGCTCAATTAATGATCCCAAGCCTTTTTGCTTATGGTCTTCTTCAATGCTTAAACAGATTCTTACAAACCCAAAATATTGTATTTCCACTGACCTTCACCTCTGGAGCTGCTACTTTGCTACATCTTATGTTATGTTGGATTTTGGTCTTCAAATCTGGACTGGGGAGTAGTGGAGCTGCCATAGCAAATTCTATATCTTACTGTGTGAATGTTTTGATGCTGGCACTCTATGTAAAGTTTTCTCCTTCTTGTGCAAAAACTTGGACAGGATTTTCAAAAGAGGCACTGCATAATATTCCTTCTTTTCTGAGGCTTGCTATTCCTTCAGCTGCTATGGTTTGCTTGGAGATGTGGTCATTTGAAATGGTGGTTCTCCTATCCGGTCTTCTGCCAAACCCTAAGTTGGAAACATCAGTATTTTCTATCTGCTTGAATACAGCAGAAACTTTTTGGATGATCTCATTTGGTTTCAGTGGAGCTGTGAGCACTCGAGTATCAAATGAACTAGGCGCTGCTCATCCTTCGGCTGCATGTTTAGCAGTTCATGTTGTCTTAGTAATGGCACTTATCGAAGGAACCTTAGTTGGAACAGTGATGATATTAATCCGCAATATTTGGGCCTATGCGTATAGTAATGAAATAGAGGTGGTCGAATATGTAGCAAAAATGTTGCCAATTCTTGCAGTATCACACTTCCTGGATGGATTCCAGTGTGTGCTTTCAGGTGCAGTTAGAGGATGTGGTTGGCAGGAAATTGGTGCCATTATCAACCTAGGCTCTTATTATGCAGTTGGGATTCCATCAGCTATTGTGTTAGCTTTTGTATTATGTATTGGAGGGAAGGGGCTTTGGCTAGGGATGATATGTGCACTTGTTGTACAAGTAGTGTCTTTAGTAATCATAACCTTACGTACTGATTGGGAGCAGGAGGCAAAGAAGGCTATAGATAGAGTCAATGATTCAATGACACCAGAGAGCATAGTATCCTGA 1551 0.412 MNEFVCVSEKCNMGDRKDENGSSLQSPLLQIISVQKDDTEAVREQYKERVVELESVRRKNFFEEVKKQLWLAGPLTSASLLNFGIQIISVMFVGHLGELPLAGASMATSFTSVTGISVLLGMATALDTLCGQSYGAKQEQMLGIHMQRAMLSLMIVSIPLAIIWANTSSILIFLGQDPEISEEAGKFAQLMIPSLFAYGLLQCLNRFLQTQNIVFPLTFTSGAATLLHLMLCWILVFKSGLGSSGAAIANSISYCVNVLMLALYVKFSPSCAKTWTGFSKEALHNIPSFLRLAIPSAAMVCLEMWSFEMVVLLSGLLPNPKLETSVFSICLNTAETFWMISFGFSGAVSTRVSNELGAAHPSAACLAVHVVLVMALIEGTLVGTVMILIRNIWAYAYSNEIEVVEYVAKMLPILAVSHFLDGFQCVLSGAVRGCGWQEIGAIINLGSYYAVGIPSAIVLAFVLCIGGKGLWLGMICALVVQVVSLVIITLRTDWEQEAKKAIDRVNDSMTPESIVS* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0258 516 PANTHER PROTEIN DETOXIFICATION 44 504 - -
Tpr3g0258 516 PANTHER MULTIDRUG RESISTANCE PROTEIN 44 504 - -
Tpr3g0258 516 Coils Coil 36 56 - -
Tpr3g0258 516 CDD MATE_eukaryotic 64 500 IPR045069 GO:0042910|GO:1990961
Tpr3g0258 516 TIGRFAM matE: MATE efflux family protein 74 471 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tpr3g0258 516 Pfam MatE 295 456 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tpr3g0258 516 Pfam MatE 74 234 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0258 Tpr-Chr3 3017312 3020424 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0258 K03327 - gmx:100792588 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0258 3 3017312 3020424 Tpr3g0258 3 3017312 3020424 ECH