Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0237 ATGGATGAAGAGTGTGATTATCTGTTCAAGGCAGTACTGATCGGAGACTCTGGAGTAGGGAAAACAAATATGCTATCAAGATTTTCAAAAGATGAATTCAGGTTGGATTCTAAACCAACTATAGGAGTTGAATTTGCTTACAGAAACATCAGGGTTAAAGACAAACTCATCAAAGCTCAAATATGGGACACTGCCGGCCAAGAAAGGTTTAGAGCAATCACAAGTTCGTATTATAGAGGAGCCTTGGGAGCATTATTGGTGTATGACATAACGAGGCGATCGAGTTACAAAAGTGTAGGCAGATGGTTAGGGGAACTAAGGGAGTTTGGTGGGGAAGACATGGTAGTTATTCTGGTTGGTAACAAATGTGATCTTGGTGAATCAAGAGAAGTAGAGGAAGAAGAAGCTAAAGAGTTTGCAGAGACAGAAGGGTTGTTTTTTATGGAAACCTCTGCTTTGAAGAATCTAAACGTTGAACAAGTGTTCTTACAAATGATCACAAAGATACTTGAAATCACAAACCAGAGAAGTTTGGAAGCCAAAATGGATGAGAAACCGATTAATCTTTTGAATGGGAAGGAGATTCATATAGCTGATCATGATGATGAAGTCACCGCAACTAAACAGGCTCCTTGTTGTTCGTGA 645 0.3953 MDEECDYLFKAVLIGDSGVGKTNMLSRFSKDEFRLDSKPTIGVEFAYRNIRVKDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRSSYKSVGRWLGELREFGGEDMVVILVGNKCDLGESREVEEEEAKEFAETEGLFFMETSALKNLNVEQVFLQMITKILEITNQRSLEAKMDEKPINLLNGKEIHIADHDDEVTATKQAPCCS* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0237 214 SMART rab_sub_5 9 172 - -
Tpr3g0237 214 TIGRFAM small_GTP: small GTP-binding protein domain 8 162 IPR005225 GO:0005525
Tpr3g0237 214 SMART ran_sub_2 14 212 - -
Tpr3g0237 214 ProSiteProfiles small GTPase Rab1 family profile. 4 213 - -
Tpr3g0237 214 PANTHER RAS-RELATED PROTEIN RABA6B 2 213 - -
Tpr3g0237 214 ProSiteProfiles small GTPase Rho family profile. 2 170 - -
Tpr3g0237 214 SMART rho_sub_3 11 172 IPR001806 GO:0003924|GO:0005525
Tpr3g0237 214 ProSiteProfiles small GTPase Ras family profile. 3 205 IPR001806 GO:0003924|GO:0005525
Tpr3g0237 214 Pfam Ras family 10 170 IPR001806 GO:0003924|GO:0005525
Tpr3g0237 214 PANTHER DRAB11-RELATED 2 213 - -
Tpr3g0237 214 SMART ras_sub_4 6 172 - -
Tpr3g0237 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 186 IPR027417 -
Tpr3g0237 214 PRINTS Transforming protein P21 ras signature 9 30 - -
Tpr3g0237 214 PRINTS Transforming protein P21 ras signature 32 48 - -
Tpr3g0237 214 PRINTS Transforming protein P21 ras signature 50 72 - -
Tpr3g0237 214 PRINTS Transforming protein P21 ras signature 112 125 - -
Tpr3g0237 214 PRINTS Transforming protein P21 ras signature 147 169 - -
Tpr3g0237 214 Gene3D - 1 213 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0237 Tpr-Chr3 2854860 2858064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0237 10 201 EF-hand Containing Proteins AT5G27540 26.341 8.17e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0237 K07976 - mtr:MTR_8g107070 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0237 3 2854860 2858064 Tpr3g0237 3 2854860 2858064 ECH