Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0165 ATGGCTTCTGCAGGGATTATTAACAAACCTTTTTCAATTCCTCCATACCCTGAGATGATTTTGAAGGCAATAGAAGAATTAAACGAAGAAAATGGTTCAAACAAATCCTCAATATCCAAGTACATAGAAGCCACATACGGTGGCTTGCCTCAAGGACATAAGGCACTGCTCAACTTGCACCTTGCAAGAATGAGGGACAGTGGTGAGCTTGTATTTTGGAAAAACAACTACACAAAGCGTGACCCAAATGCTCCACCGAGAAGGGGCCGCGGAAGGCCACCAAAGCCCAAAGAATCTTTTTCTTTAGGTGTCATCTACTCACCGCCCAAGCCTAGAGGTCGTCCGCCAAATGATCCACCAAAGTCCCCAAAAGTTAACGCCTCAATTGGGAGCGGGAGGCCTAGAGGTCGGCCAAGGAAGATGTCTCAGCCGACTAGAGGATTTGGCGGAGCATTGACTTCGGCTGTAGGGACTGGCGGTAGTGGGAGGCCTAGGGGTAGGCCTCCAAAGATGAAGTCCACACCATTGACTGAAATTAGTGCTTAA 546 0.4817 MASAGIINKPFSIPPYPEMILKAIEELNEENGSNKSSISKYIEATYGGLPQGHKALLNLHLARMRDSGELVFWKNNYTKRDPNAPPRRGRGRPPKPKESFSLGVIYSPPKPRGRPPNDPPKSPKVNASIGSGRPRGRPRKMSQPTRGFGGALTSAVGTGGSGRPRGRPPKMKSTPLTEISA* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0165 181 SUPERFAMILY "Winged helix" DNA-binding domain 9 94 IPR036390 -
Tpr3g0165 181 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 12 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr3g0165 181 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Tpr3g0165 181 SMART AT_hook_2 162 174 IPR017956 GO:0003677
Tpr3g0165 181 SMART AT_hook_2 132 144 IPR017956 GO:0003677
Tpr3g0165 181 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Tpr3g0165 181 SMART h15plus2 10 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr3g0165 181 MobiDBLite consensus disorder prediction 81 95 - -
Tpr3g0165 181 Gene3D - 10 90 IPR036388 -
Tpr3g0165 181 Pfam linker histone H1 and H5 family 14 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr3g0165 181 Pfam AT hook motif 132 142 IPR017956 GO:0003677
Tpr3g0165 181 Pfam AT hook motif 88 95 IPR017956 GO:0003677
Tpr3g0165 181 Pfam AT hook motif 109 120 IPR017956 GO:0003677
Tpr3g0165 181 Pfam AT hook motif 162 173 IPR017956 GO:0003677
Tpr3g0165 181 PANTHER HMG-Y-RELATED PROTEIN A 7 173 IPR031059 GO:0003677|GO:0005634
Tpr3g0165 181 PRINTS AT-hook-like domain signature 87 97 IPR017956 GO:0003677
Tpr3g0165 181 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Tpr3g0165 181 PRINTS AT-hook-like domain signature 130 140 IPR017956 GO:0003677
Tpr3g0165 181 MobiDBLite consensus disorder prediction 78 181 - -
Tpr3g0165 181 PRINTS High mobility group protein (HMGY) signature 85 97 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Tpr3g0165 181 PRINTS High mobility group protein (HMGY) signature 121 140 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Tpr3g0165 181 PANTHER HISTONE H1 7 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0165 Tpr-Chr3 2038243 2040258 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0165 - - gmx:100803968 210.305