Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0127 ATGAATGTTATCAGAAAGCGAAGTTACCATTCAATTTCATCACCATCACCATTAGTCTCACTCTTTCAAACCAACACAACCCTCTCTCCATTACCAATGCCACCATTAGGCAAAACAAAATCAGAATCCCTCTTCGAAATCATTTCCAAAAATCCATACCTAACTTTCGAAAAATCTCTCGAAGATGCTTGCGTCAATCTCACACCACAAGACGTTGAAGAAGTCCTCAAACTCTGCTACGAGTTTCCGACTCATGCAGTAAAGTTCTTCCGTTGGGCCGATCCTCGTATCAACCATAACCATTCTCCTTATGCTTGGTATTTGGTAATCGATATTTTAGGTAAAAATCGTTTATTTGAACCAATGTGGGACTGGGTGAAATTAATGAGGCGAGAAGGTTTGCTTTCAAGGTCAAATTTTTCTTCGATTTTCGCTAGTTATATTAATGCAGGTAGAATTGATAGTGCTATTAAGACATTTGAGGTGATGGATTGTTATGGTTGTGTTAGGGACGTTTTTTCGTTGAACTCACTATTGAATGCTATTTGTAGTAGTGGTAGAGTTGTTGAAGCTTGTGATTATTTAAAAATTGCAAAGAAACATGTTAAACCTGATTCTGATACCTATGCTATTTTGATGGAAGGTTTCGAAAGTGATGGGAATGTTGTTGGTGCTAGGGATAATTTTGTTGAAATGATTTTTGAAATTGGTTGGGAGCCTGCTAATGTTCTTGCTTATGATTCGTTTTTGTGTACTTTGATTAAAGGTTCCGGTGGGATTTGTGAAGCTGTTAAGTTTTTTGATTCGCTGAGTGATATGAGATGTTACCCGGGAATTAGATTTTTTGGGGTTGCGCTTGATGAGTGTGCTAAGTTTCATAATTTAAGGAGGGCTAAGTTTTTTTGGGAGTTTATGTTGGGGAAAACCGAATTGCAGCCAACGACTGCGATGTATAATTCGATGATTGCTTTGTATTGCTATCATGGTGATATTGATGTTGCTATGAAGATGCTTGATGAGATGGTTCATAGAGAGGCTTTTCCGGATTCACTTACATATAATTTGTTGCTTAGGTATTTGATTAAAGGTAGGAAATTGTTGAAGGCTACAAGGATGTTTACTGAGATGGTGAAAAATGAATGTGTGCCGGATCAACTTAATTGTCATGCGGCGGTTAAGGTTTATTTAGATAATGGACATACTGCTATGGCTATCAAAGTTTGGAAATTTTTGGTAGAGAATTACCGTGGAGATTTAGAGCGTACTGCTAATCTACTGGTTGTAGGGCTTCAAAATAATGGTAAAGTCACTGAAGCAGTTATGTATGCTAAGGATATTATTAGAAGAGGAATCAAGTTAACTTCTTCTACACTGTCCAAGTTGCTGAAAGCGGAAAGCGGCATATAA 1407 0.3746 MNVIRKRSYHSISSPSPLVSLFQTNTTLSPLPMPPLGKTKSESLFEIISKNPYLTFEKSLEDACVNLTPQDVEEVLKLCYEFPTHAVKFFRWADPRINHNHSPYAWYLVIDILGKNRLFEPMWDWVKLMRREGLLSRSNFSSIFASYINAGRIDSAIKTFEVMDCYGCVRDVFSLNSLLNAICSSGRVVEACDYLKIAKKHVKPDSDTYAILMEGFESDGNVVGARDNFVEMIFEIGWEPANVLAYDSFLCTLIKGSGGICEAVKFFDSLSDMRCYPGIRFFGVALDECAKFHNLRRAKFFWEFMLGKTELQPTTAMYNSMIALYCYHGDIDVAMKMLDEMVHREAFPDSLTYNLLLRYLIKGRKLLKATRMFTEMVKNECVPDQLNCHAAVKVYLDNGHTAMAIKVWKFLVENYRGDLERTANLLVVGLQNNGKVTEAVMYAKDIIRRGIKLTSSTLSKLLKAESGI* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0127 468 Pfam PPR repeat 174 196 IPR002885 -
Tpr3g0127 468 Pfam PPR repeat 105 134 IPR002885 -
Tpr3g0127 468 Pfam PPR repeat 140 168 IPR002885 -
Tpr3g0127 468 TIGRFAM PPR: pentatricopeptide repeat domain 317 349 IPR002885 -
Tpr3g0127 468 TIGRFAM PPR: pentatricopeptide repeat domain 352 384 IPR002885 -
Tpr3g0127 468 TIGRFAM PPR: pentatricopeptide repeat domain 140 172 IPR002885 -
Tpr3g0127 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Tpr3g0127 468 Pfam PPR repeat family 313 360 IPR002885 -
Tpr3g0127 468 Gene3D Tetratricopeptide repeat domain 365 467 IPR011990 GO:0005515
Tpr3g0127 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Tpr3g0127 468 Gene3D Tetratricopeptide repeat domain 250 364 IPR011990 GO:0005515
Tpr3g0127 468 PANTHER OS02G0711100 PROTEIN 14 461 - -
Tpr3g0127 468 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 14 461 - -
Tpr3g0127 468 Gene3D Tetratricopeptide repeat domain 80 248 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0127 Tpr-Chr3 1551061 1552467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0127 129 464 Glycosyltransferase AT1G05670 23.894 3.75e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0127 - - gmx:100784707 536.954