Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0118 ATGGAAGATCCATCAGAGAGATTGGGATCAGAGGAATTAGACACAAGCATAACCGTTAAGACCGATGACTTATCCATGGAAATTGATCCGCCTTTTCAGGAAAACGCCGTAACTGCCGAAGATTGGCGGAAGTCTCTTCGCAAAGTCGTCCCTGCCGTCGTCGTTCTTCGAATAACCGCTACCCGTGCTTTTGATACCGAGTCTGCTTCTGCCAGCTCAGCTACCGGCTTCGTCGTCGATAAACGCCGTGGGATTATTCTTACTAATCGTCATGTCGTTAAGCCTGGACCGGTTGTTGCTGAAGCTATGTTTTTGAACCGTGAAGAGGTTCCGGTTCATCCTATTTACAGAGATCCAGTACATGATTTTGGGTTCTTTCAATATGATCCTAGTGCTATACAATTTCTAAATTATGAAGAGATACCGCTTGCTCCTGAGGGTGCTTGTGTTGGATTAGAAATCAGAGTGGTCGGTAATGATAGTGGTGAGAAGGTTTCCATTTTGGCTGGTACTCTTGCTCGTTTGGATAGGGATGCTCCTCACTATAAGAAGGATGGTTATAACGACTTCAACACATTCTATATGCAAGCAGCATCTGGGACCAAAGGAGGATCGAGTGGTTCCCCAGTTATAGATTGGCAAGGCAGGGCTGTTGGCCTGAATGCTGGGAGCAAGACAACAAGTGCATCAGCTTTCTTTTTACCTCTAGAACGAGTTGTGAGGGCATTAAGGTTTCTTCAAAAGGGCAGTGAAACATATGTTGATAAATGGATGCCAGTTTCTATACCTCGTGGTACTCTTCAGGTGACTTTTCTCCATAAAGGGTTTGATGAGACTCGTCGGCTTGGCCTCAGAACTGAGACAGAGCAGATAGTTCGAAATGCTTCTCCTGCCAGTGAAACTGGAATGCTTGTTGTGGAATCTGTGGTGCCAGGTGGTCCAGGTTATAAAAATTTGGAACCGGGGGATGTACTTGTTCGTGTCAATGGTGAAGTCATCACCCAATTCCTGAAACTGGAGACTATACTTGATGACAGTGTAAACTCAAGTATCGAATTACAAATTGAAAGGGGTGGTGCATCAAAGAGTTTAACTCTATCGGTGCAAGATTTGCACTCAATAACTCCCAATTATTTCTTGGAAGTTAGTGGAGCAGTAATCCAACCTCTTTCATATCAGCAGGCTAGAAACTTCCGATTCAATTGTGGTCTTGTTTATGTGACAGAACCAGGATATATGCTCTTTAAAGCAGGAGTTCCTCGCCATGCGATAATTAAGAAATTTGCTGGTGAAGAAATATCTTGCCTCGAGGAACTAATATCAGTTCTGTCTAACCTATCAAGGGGAGCTCGAGTTCCATTGGAGTATATAAGCTACGTGGATCGTCATCGAAGGAAGTCGGTGTTGGTGACAGTTGATCGCCACGAATGGTATGCACCTCCCCAGATATATACTCGGGACGACAGTACTGGCCTCTGGATTGCTAAGCCTGCTTTTCAGCCCGATTCCCCGTTTTTATCATCTGGAAATCTGGCCGGTCGTCCAAGTTCGTTGACCGGTGAGCATGCTGACGGGGGAGATGTGTGTGAAGGTAACCATCAGGAGTTGGTCGATGGTGTCACTAGCATGGAAACTAATTCTGAAGATCCTTCAGTGTGTGCATCTCATGACAACGGATCTGACGGGATAATAAAAAAACGGAGAGTGGATGATTTATCAACTGATGGAAGTGTTGCTGATATTTCCTTAAATGAGCCCGAGGAAACTAAGCTAGAAATATCGAGTGCCATACAGGATGATGGGTTAATGGACTATCAAGGTGCAACTGCTGCCACAGCAAATGCATCAGTCACTGAACGTGTGATTGAGTCTACTCTTGTGATGTTTGAGGTTCACGTTCCTCCATCTTGTATGCTTGATGGTGTTCATTCACAGCATTTTTTTGGAACGGGAGTCATAATATATCACAGTCAAGACATGGGATTAGTTGCAGTTGACAAGAATACTGTTGCAGTATCTTCCTCTGATGTGTTGCTATCTTTTGCTGCTTTCCCAGTTGAAATTCCTGGAGAGGTGGTATTTCTCCATCCTGTTCACAATTATGCTCTCATATCATATGATCCATCTGCTTTGGGACCTGTTGGTGCTTCAGTGGTTCGTGCCGCAGAATTACTTCCAGATCCGGCATTACGTCGAGGAGATTCTGTTTACCTTGTGGGCTTAAGTAGAAGCCTTCAAGCAACTTCTAGGAAATCAGTTGTTACCAATCCTTCCGCTGCTTTAAATATAGGGTCTGCAGACTCCCCACGTTACAGAGCGACCAACATGGAAGTTATCGAGCTTGATACTGATTTTGGTAGTTCATTTTCGGGTGTGCTAACAGATGAACAAGGAAGGGTCCAAGCTTTATGGGGAAGCTTCTCTACTCAGCTGAAATTCAGTGGCAGCACATCAGAAGATCATCAATTTGTTAGGGGGATTCCAATTTATGCAATAAGCCAGGTCCTAGACAAGATCATATCTGGTGTGAATGGACCACCACTTCTAATAAATGGTGTCAAGAGGCATATGCCACTTTTGAGAATATTAGAAGTTGAACTTTATCCAACATTACTTTCAAAGGCTCGCAGTTTTGGATTAAGTGATGCTTGGATTCAGGCGTTTGTTAAGAAAGATCCAATAAGACGACAGGTTTTACGTGTTAAAGGTTGTTTAGCTGGATCAAAGGCTGAGAATCTTTTGGAGCAAGGGGACATGGTTTTAGCAATCAATAAAGAACCAGTCACATGCTTCCGTGACATTGAAAATGCTTGCCAAGCTTTAGATCAATCTAATACCAATGATGGCAAGCTTCAGATGACTATTTTTCGGCAGGGACGAGAGGTTGAACTTCTTGTGGGAACAGATGTTAGGGATGGAAATGGCACAACTCGTACAATTAATTGGTGTGGTTGTATAGTTCAAGATCCACATTCAGCGGTACGTGCTCTTGGATTTCTTCCTGAAGAGGGTCATGGTGTATATGTGGCAAGGTGGTGTCATGGGAGTCCTGTACATAGATATGGTCTGTATGCTCTTCAGTGGATAGTTGAAATTAATGGAAAACCAACTCCAGATCTAGATTCTTTTGTTAACGTTACGAAGGAACTAGAGCATGGAGAGTTTGTCCGTGTAAGAACAATTCACCTCAATGGGAAGCCGCGAGTGCTAACATTGAAACAAGATCTGCATTACTGGCCTACATGGCAGTTAAGGTTTAGTCCAGACACGGCAATTTGGCATCGTAATGTAATCAAGGCATTGGACCGCAGTACTGTATGA 3321 0.4381 MEDPSERLGSEELDTSITVKTDDLSMEIDPPFQENAVTAEDWRKSLRKVVPAVVVLRITATRAFDTESASASSATGFVVDKRRGIILTNRHVVKPGPVVAEAMFLNREEVPVHPIYRDPVHDFGFFQYDPSAIQFLNYEEIPLAPEGACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVGLNAGSKTTSASAFFLPLERVVRALRFLQKGSETYVDKWMPVSIPRGTLQVTFLHKGFDETRRLGLRTETEQIVRNASPASETGMLVVESVVPGGPGYKNLEPGDVLVRVNGEVITQFLKLETILDDSVNSSIELQIERGGASKSLTLSVQDLHSITPNYFLEVSGAVIQPLSYQQARNFRFNCGLVYVTEPGYMLFKAGVPRHAIIKKFAGEEISCLEELISVLSNLSRGARVPLEYISYVDRHRRKSVLVTVDRHEWYAPPQIYTRDDSTGLWIAKPAFQPDSPFLSSGNLAGRPSSLTGEHADGGDVCEGNHQELVDGVTSMETNSEDPSVCASHDNGSDGIIKKRRVDDLSTDGSVADISLNEPEETKLEISSAIQDDGLMDYQGATAATANASVTERVIESTLVMFEVHVPPSCMLDGVHSQHFFGTGVIIYHSQDMGLVAVDKNTVAVSSSDVLLSFAAFPVEIPGEVVFLHPVHNYALISYDPSALGPVGASVVRAAELLPDPALRRGDSVYLVGLSRSLQATSRKSVVTNPSAALNIGSADSPRYRATNMEVIELDTDFGSSFSGVLTDEQGRVQALWGSFSTQLKFSGSTSEDHQFVRGIPIYAISQVLDKIISGVNGPPLLINGVKRHMPLLRILEVELYPTLLSKARSFGLSDAWIQAFVKKDPIRRQVLRVKGCLAGSKAENLLEQGDMVLAINKEPVTCFRDIENACQALDQSNTNDGKLQMTIFRQGREVELLVGTDVRDGNGTTRTINWCGCIVQDPHSAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKPTPDLDSFVNVTKELEHGEFVRVRTIHLNGKPRVLTLKQDLHYWPTWQLRFSPDTAIWHRNVIKALDRSTV* 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0118 1106 Pfam PDZ domain 305 357 IPR041489 -
Tpr3g0118 1106 PRINTS HtrA/DegQ protease family signature 84 96 IPR001940 GO:0004252|GO:0006508
Tpr3g0118 1106 PRINTS HtrA/DegQ protease family signature 150 174 IPR001940 GO:0004252|GO:0006508
Tpr3g0118 1106 PRINTS HtrA/DegQ protease family signature 191 208 IPR001940 GO:0004252|GO:0006508
Tpr3g0118 1106 PRINTS HtrA/DegQ protease family signature 213 230 IPR001940 GO:0004252|GO:0006508
Tpr3g0118 1106 PRINTS HtrA/DegQ protease family signature 318 330 IPR001940 GO:0004252|GO:0006508
Tpr3g0118 1106 PANTHER PROTEASE DO-LIKE 7 21 1102 - -
Tpr3g0118 1106 Gene3D - 278 375 IPR036034 GO:0005515
Tpr3g0118 1106 Gene3D - 979 1077 IPR036034 GO:0005515
Tpr3g0118 1106 Pfam Peptidase family M50 305 374 IPR008915 GO:0004222|GO:0006508
Tpr3g0118 1106 Pfam Trypsin-like peptidase domain 74 220 - -
Tpr3g0118 1106 SUPERFAMILY PDZ domain-like 900 1002 IPR036034 GO:0005515
Tpr3g0118 1106 CDD PDZ_serine_protease 280 366 - -
Tpr3g0118 1106 SUPERFAMILY PDZ domain-like 304 400 IPR036034 GO:0005515
Tpr3g0118 1106 Pfam PDZ-like domain 976 1052 IPR025926 -
Tpr3g0118 1106 Pfam PDZ-like domain 373 446 IPR025926 -
Tpr3g0118 1106 SUPERFAMILY Trypsin-like serine proteases 625 840 IPR009003 -
Tpr3g0118 1106 SMART pdz_new 280 359 IPR001478 GO:0005515
Tpr3g0118 1106 SMART pdz_new 876 959 IPR001478 GO:0005515
Tpr3g0118 1106 SMART pdz_new 995 1064 IPR001478 GO:0005515
Tpr3g0118 1106 Gene3D - 146 258 IPR043504 -
Tpr3g0118 1106 ProSiteProfiles PDZ domain profile. 269 333 IPR001478 GO:0005515
Tpr3g0118 1106 SUPERFAMILY PDZ domain-like 1004 1088 IPR036034 GO:0005515
Tpr3g0118 1106 Gene3D - 29 140 IPR043504 -
Tpr3g0118 1106 PANTHER PRO-APOPTOTIC SERINE PROTEASE NMA111 21 1102 - -
Tpr3g0118 1106 Gene3D - 874 972 IPR036034 GO:0005515
Tpr3g0118 1106 SUPERFAMILY Trypsin-like serine proteases 40 244 IPR009003 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0118 Tpr-Chr3 1471217 1488681 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0118 K22686 - gmx:100809144 1967.59