Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0078 ATGGGGCGTCTAAAGCTGCAAGCGGGTATAAATTCAATAGAGGAAGAGGAGCCTGAAGAATGTGATGCTGCCTGTCCTAATAGAACGACTTTATCATGCATGATAAATTCAGAAATTGGTGCTGTTTTGGCAGTAATGAGAAGAAATGTAAGATGGGGAAGTCGTTATATGTCAGGTGATGATCATTTGGAGCACTCTCTTATTCAGTCTTTTAAGGCATTAAGGAGACAAATATTTTCATGGAACCACCATCAGTGGCAAGCTATCAACCCAACCCTGTATCTACAGCCTTTTCTTGATGTGATTCGGTCTGATGAAACCGGTGCAGCAATTACAGGTGTTGCTTTGTCATCTGTTTACAAGATCTTGACCCTTGATGTCATTGATCATAATACTGTCAATGTTGAGGAGGCTATTCACTTGGTGGTTGATGCTGTCACTAGCTGCAGATTTGAGGTCACAGATACTACTTCTGAAGAAGTTGTTTTAATAAAGATACTACAAGTTCTCCTAGCTTGTATGAAAAGCAAAGCGTCTGTAATGCTGAGTAACCAACATGTTTGCACCATAGTCAATACTTGTTTCCGTATAGTTCATCAAGCTGGAAACAAAGGCGAGTCATTGCAGCAGATATCACGGTACACAATGCATGAACTTGTGAGGTGTATTTTTTCTCACCTTCAAGATGTTGACAACACAGACCATGCATTGGTTAATGGAAGCTCTAATCTGAAACAAGAGACTGGAGGCCTAAATAATGAGTATGCTTTCGGAAGTAGAAAGTTGGAGAATGGAAGCGTGAACTCTGAATATGATAATCAGCCGCTATCTGCAAACTTTGCTTCAAATTCTGCAAGTGCTGTGACAGTAACCATGATGGATGAAAACACAGCGATTGCTCTTACTGGCAAGGAGAGTGCATCATATGACGTGCATCTCATGACTGAACCATATGGTGTTCCTTGCATGGTGGAAATTTTTCACTTTTTGTGTTCTTTGCTGAATGTTATTGAGAATATGGAACTGGGTCCTAGATCAAACACTATAGCATTTGATGAAGATGTACCCCTCTTTGCTTTAACTTTAATCAATTCAGCTATAGAACTTGGTGGGCCTTCTATTCACCGTCACCCAAGGTTGCTAAGCTTAATTCAGGACGAGCTTTTTCATAATCTGATACAATTTGGTTTGTCAATGAGTCCTCTTATACTTTCAATGGTGTGTAGCATTGTTCTCAATCTGTATCATCATCTTCGTACCGAACTCAAATTACAGCTAGAAGCATTTTTTTCTTGTGTCATTTTGAGACTTGCACAAAGCAGATATGGGGCTTCATATCAGCAACAAGAGGTAGCCATGGAAGCCCTTGTTGACTTCTGCAGACAAAAGACTTTTATGGTTGATATGTATGCTAACTTTGATAGTGACATAACTTGTAGTAATGTCTTTGAAGACCTTGCTAATTTGCTGTCAAGAAGTGCATTTCCTGTGAACTGTCCGTTGTCTGCTATGCATATTCTTGCTTTGGATGGTCTTATTGCCGTTATACAGGGAATGGCTGAAAGGATAACCAATGGATCTGCAGACTCAGAATATTCTCCAGTAAATCTTGAAGAGTATATTCCATTCTGGATGGTTAAATGTGAAAATTATGGTGATCCAAATCATTGGGTTCCTTTCACCCGTCGCAGAAAGTACATAAAGAGAAGATTGATGATTGGTGCTGACCACTTCAATCGTGATCCTAAGAAAGGTCTGGAGTTTCTCCAGGGAACACATCTTTTGCCCGACAAACTTGATCCCCAAAGTGTTGCTTGCTTTTTCAGATACACTGCTGGGTTGGATAAGAATCTTGTTGGTGATTTTCTTGGAAATCATGATGAATTTTGTGTTCAGGTTCTTCATGAATTTGCTGGAACATTTGATTTCCAAGATATGAACTTAGACACAGCCCTTCGTCTATTTCTGGAGACTTTCAGACTGCCTGGAGAGTCGCAAAAGATACATAGGGTGCTTGAAGCTTTCTCTGAGAGATACTATGAACAGTCACCACATATCCTAGCTAACAAGGATGCTGCTCTTGTGTTATCATACTCAATGATAATGCTTAATACAGACCAGCATAATGTGCAGGTTAAAAAGAAGATGACAGAAGAGGATTTTATCCGGAATAATAGGCATATAAATGGTGGCAGTGACCTTCCTCGAGAATTCTTATCAGAGATTTATCATTCAATTTGTAAGAATGAAATCCGCACAACTCCTGAGCAAGGTGTTGGGTTTCCAGAAATGACACCAAGTCGATGGATTGATCTACTGCACAAGTCAAAGAAAACTGCTCCATTTATTGTATCTGGTTCCAAGGCCTACCTTGATCATGATATGTTTGCCATAATGTCAGGCCCAACTATTGCTGCCATCTCTGTTGTATTCGATCATGCCGAACATGAAGAGGTATACCAAACATGTATGGATGGATTCCTAGCTATTGCTAAGATATCTGCCTGTCATCATCTTGAAGATGTTCTGGATGATCTAGTAGTGTCACTTTGCAAGTTCACTACACTCTTAAATCCATCATTGGTTGAGGAACCAGTCCTTGCCTTTGGAGATGACATGAAAGCAAGAATGGCAACTGTAACAGTATTCACTATTGCAAATAGGTATGGTGATTACATACGCACGGGTTGGAGAAATATTCTTGATTGCATTTTAAGATTGCACAAGCTAGGTCTTCTTCCTGCCCGTGTTGCCAGTGATGCAGCTGATGAGTCAGAGCTTTCTTCCGAAACTGTGCATGGCAAGCCTATTGTGAATTCTTTATCTTCAGCTCATATGCAGTCCATTGGCACGCCAAGGAGATCCTCAGGATTGATGGGCAGGTTTAGTCAGCTCTTATCTCTTGACACTGAGGAGCCAAGATCACAACCTACTGAACAACAGCTTGCTGCTCATCAGCGCACTCTTCAAACAATTCAGAAGTGTCACATTGACAGCATATTCACCGAGAGCAAATTTCTGCAAGCTAAATCTCTTGAACAGCTTGCAAAAGCGCTCATTTGGGCCGCAGGTCGACCTCAAAAAGTGAACAGCACACCGGAGGATGAAGATACAGCTGTTTTCTGCTTGGAGCTGCTGATTGCAATAACTTTGAATAACAGGGATAGAATAGGGATTCTTTGGCCGGGTGTATATGACCACATATCCAATATTGTTCAGTCAACTGTAATGCCCTGTGCCTTGGTAGAGAAGGCTGTTTTTGGACTCCTGCGGATTTGCCAGCGATTGCTCCCCTACAAAGAAAACATTGCTGACGAACTTTTGAGATCGTTGCAACTTGTCTTAAAGCTTGATGCGCGAGTTGCTGATGCTTACTGTGAACAGATTACTCAGGAAGTCAGCCGCCTTGTGAAGGCAAATGCTTCTCACATAAGATCCCAGTTAGGATGGCGTGCAATTACATCACTGCTTTCCATCACTGCTAGGCACATAGAAGCATCCGAGTCTGGGTTTGATGCACTTCTTTTCATTATGTCTGATGGTGCCCACTTGCTTCCAGCTAATTATGTTCTCTGCGTAGATACTGCAAGGCAGTTTGCTGAGTCTCGTGTTGGCCAAGCTGAGAGATCTGTACGGGCACTAGATCTCATGACAGGGTCTGTCAATTGCTTGACCCGGTGGACTAGCGAGGCTAAAGAAGCAATGGAGGAGGAGCAAATGTCTAAGTTGTCTAAGGATATAGGAGACATGTGGTTGATACTAGGACAAGGTCTAAGGAAAGTGTGTTTAGACCAGAGAGAGGAGGTTAGAAATCATGCTTTATTATCTTTGCAGAAGTGTTTGACAGGAGCAGATGACATTTATCTCCCATATGGTAAGTGGTTGGACTGTTTCGATCTTGTGATCTTCACCGTGCTTGATGATCTTCTTGAGATTTCACAGGGACACTCCCAGAAGGACTATCGCAATATGGAAGGCACCCTTATCTTAGCAGTTAAGCTCTTGTCCAAAGTTTTTCTTCAATCCCTCCCAGTTTTGTCACAATTAACAACCTTCTGCAAGCTATGGTTAGGTGTACTGACCAGAATGGAAAAGTATATGAAGGTGAAAGTTAGGGGGAAAAGAAGTGAGAAGCTTCAAGAAACAGTGCCCGACCTGCTTAAAAGCTCTTTGCTTGCTATGAAAATGAGGGGTATACTGGCCCAGAGGAGTGCATTGGGTGGCGATAGTCTTTGGGAATTAACTTGGCTTCACGTGAATAACATTTCGTCTTCATTGCAACTTGAGGTATTCCCTGAGCAGGATTCTGAACATTTTCAGCACAAACAGGGTGAATTGGTAGGAGGTTTGGTACCTGATGAAAAGGTTTCTGTTTCTTCAAGTGAAATTGCCAGCCTTGAAGATGCTGGCATTGTTGGTTAA 4422 0.4179 MGRLKLQAGINSIEEEEPEECDAACPNRTTLSCMINSEIGAVLAVMRRNVRWGSRYMSGDDHLEHSLIQSFKALRRQIFSWNHHQWQAINPTLYLQPFLDVIRSDETGAAITGVALSSVYKILTLDVIDHNTVNVEEAIHLVVDAVTSCRFEVTDTTSEEVVLIKILQVLLACMKSKASVMLSNQHVCTIVNTCFRIVHQAGNKGESLQQISRYTMHELVRCIFSHLQDVDNTDHALVNGSSNLKQETGGLNNEYAFGSRKLENGSVNSEYDNQPLSANFASNSASAVTVTMMDENTAIALTGKESASYDVHLMTEPYGVPCMVEIFHFLCSLLNVIENMELGPRSNTIAFDEDVPLFALTLINSAIELGGPSIHRHPRLLSLIQDELFHNLIQFGLSMSPLILSMVCSIVLNLYHHLRTELKLQLEAFFSCVILRLAQSRYGASYQQQEVAMEALVDFCRQKTFMVDMYANFDSDITCSNVFEDLANLLSRSAFPVNCPLSAMHILALDGLIAVIQGMAERITNGSADSEYSPVNLEEYIPFWMVKCENYGDPNHWVPFTRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIHRVLEAFSERYYEQSPHILANKDAALVLSYSMIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGSDLPREFLSEIYHSICKNEIRTTPEQGVGFPEMTPSRWIDLLHKSKKTAPFIVSGSKAYLDHDMFAIMSGPTIAAISVVFDHAEHEEVYQTCMDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPSLVEEPVLAFGDDMKARMATVTVFTIANRYGDYIRTGWRNILDCILRLHKLGLLPARVASDAADESELSSETVHGKPIVNSLSSAHMQSIGTPRRSSGLMGRFSQLLSLDTEEPRSQPTEQQLAAHQRTLQTIQKCHIDSIFTESKFLQAKSLEQLAKALIWAAGRPQKVNSTPEDEDTAVFCLELLIAITLNNRDRIGILWPGVYDHISNIVQSTVMPCALVEKAVFGLLRICQRLLPYKENIADELLRSLQLVLKLDARVADAYCEQITQEVSRLVKANASHIRSQLGWRAITSLLSITARHIEASESGFDALLFIMSDGAHLLPANYVLCVDTARQFAESRVGQAERSVRALDLMTGSVNCLTRWTSEAKEAMEEEQMSKLSKDIGDMWLILGQGLRKVCLDQREEVRNHALLSLQKCLTGADDIYLPYGKWLDCFDLVIFTVLDDLLEISQGHSQKDYRNMEGTLILAVKLLSKVFLQSLPVLSQLTTFCKLWLGVLTRMEKYMKVKVRGKRSEKLQETVPDLLKSSLLAMKMRGILAQRSALGGDSLWELTWLHVNNISSSLQLEVFPEQDSEHFQHKQGELVGGLVPDEKVSVSSSEIASLEDAGIVG* 1474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0078 1473 SMART sec7_5 564 751 IPR000904 GO:0005085|GO:0032012
Tpr3g0078 1473 ProSiteProfiles SEC7 domain profile. 560 749 IPR000904 GO:0005085|GO:0032012
Tpr3g0078 1473 Gene3D - 644 760 IPR023394 -
Tpr3g0078 1473 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11 1441 - -
Tpr3g0078 1473 SUPERFAMILY Sec7 domain 565 752 IPR035999 GO:0005085|GO:0032012
Tpr3g0078 1473 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 321 482 IPR032691 -
Tpr3g0078 1473 SUPERFAMILY ARM repeat 352 1343 IPR016024 -
Tpr3g0078 1473 Pfam Sec7 domain 568 751 IPR000904 GO:0005085|GO:0032012
Tpr3g0078 1473 CDD Sec7 568 751 IPR000904 GO:0005085|GO:0032012
Tpr3g0078 1473 Gene3D - 561 643 - -
Tpr3g0078 1473 PANTHER ARF GUANINE-NUCLEOTIDE EXCHANGE FACTOR GNOM-LIKE 11 1441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0078 Tpr-Chr3 996959 1006330 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0078 K18443 - gmx:100780239 2689.45