Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g6041 ATGTTGAACCAGTTACTGGTAAAACCAGCTCAACGAACCTTGAACACTTCCCATCTCTACCACCCAAAACCACGATTCTGTCTTCAACTCACAACCGTAGCCGAATCTCCACCGCCTCCAGAAGACGCCACCGTAGCAAAACTAGTCCTCGAATCAGATCCAAAATCCCTCGCCGAAACCCTATCAAACTACAGTTTCAAATGGACCCCAAACCTTGTCGACAACGTTCTCAAACGCCTCTGGAATCACGGACCCAAAGCTCTGCAATTCTTCAAACACCTAGACCGCCACCCAACCTACATTCACTCCACGTCCGCCTTCGAACATGCCATCGACATCGCTGCCCGGTTACGCGAATACAACACCGCTTGGGCCTTAGTGGGCCGTATGCGGGGTCTCCGTCGCGGCCCAACTCCCAAAACCTTCGCAATTTTAGCTGAAAGGTACGCAACCGGTGGAAAAGCCCACCGGGCTGTGAAAGTGTTTTTGTCTATGCATGAACATGGTTGCCACCAGGATTTGAATTCATTCAATACAATTCTTGATGTATTATGCAAAACGAAACGTGTTGAGATGGCTTATAATTTGTTTAAAATGTTTAAAGGTAGGTTTAAATGTGATAGTGTTAGTTATAATATTATGGCGAATGGTTGGTGTTTGATTAAACGAACGCCGATGGCGTTGCAGGTTTTGAAGGAGATGGTTGAGAGGGGAATTACGCCGACGATGGTTACTTATAATACTTTGCTTAAAGGGTATTTTAGGTGTGGTCAATTGAATGACGCTTGGGAGTTTTTCTTGGAGATGAAGAAGAGGAAGTGTGAAATTGATGTTGTTACTTATACTACAATGGTTCATGGGTTTGGTGTTGCTGGTGAGGTTAAGAGATCGAAGAGGGTTTTCGATGCCATGGTGAAAGAGGGTTTGGTTCCTTCTGTTGCTACTTATAATGCTTTGATTCAGGTTTTCTGTAAGAAGGATAGTGTACAGAATGCTTTGTTGGTTTTTGAAGAGATGGTGGGGAAAGGGTATGTGCCTAATTTGACTACTTACAATGTTGTTATAAGAGGTTTGTGTCATTCCGGTGAAATTGAGAAAGGTTTGGAGTTTATGAAGAGAATGGAGGAACATGGGTGTAAGCCAAGTGTTCAGACATACAATGTTGTGATACGTTATTATTGTGATGATGGGGAACTTGAAAAGGGTTTCGAGTTGTTTGAAAAGATGGGGAATGGGACTTGTTTGCCCAATTTGGATACCTATAATATTCTGATCAGTGCTATGTTTGTGAGGAAGAAATCAGAGGATTTGGTGGTGGCTGGGAAATTGTTGATAGAGATGGTTGGTAGAGGTTTCTTGCCGCGTAAGTTTACTTTTAATCGGGTGTTAAATGGACTTGTTCTAACGGGGAATCGAGAGTTTGCTAATGATATATTAAGAATGCAAAGCAGGTGTGGTCGAATTCTTCGTAATGTGAAATTATGA 1485 0.4283 MLNQLLVKPAQRTLNTSHLYHPKPRFCLQLTTVAESPPPPEDATVAKLVLESDPKSLAETLSNYSFKWTPNLVDNVLKRLWNHGPKALQFFKHLDRHPTYIHSTSAFEHAIDIAARLREYNTAWALVGRMRGLRRGPTPKTFAILAERYATGGKAHRAVKVFLSMHEHGCHQDLNSFNTILDVLCKTKRVEMAYNLFKMFKGRFKCDSVSYNIMANGWCLIKRTPMALQVLKEMVERGITPTMVTYNTLLKGYFRCGQLNDAWEFFLEMKKRKCEIDVVTYTTMVHGFGVAGEVKRSKRVFDAMVKEGLVPSVATYNALIQVFCKKDSVQNALLVFEEMVGKGYVPNLTTYNVVIRGLCHSGEIEKGLEFMKRMEEHGCKPSVQTYNVVIRYYCDDGELEKGFELFEKMGNGTCLPNLDTYNILISAMFVRKKSEDLVVAGKLLIEMVGRGFLPRKFTFNRVLNGLVLTGNREFANDILRMQSRCGRILRNVKL* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g6041 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Tpr2g6041 494 Gene3D Tetratricopeptide repeat domain 296 492 IPR011990 GO:0005515
Tpr2g6041 494 Gene3D Tetratricopeptide repeat domain 44 200 IPR011990 GO:0005515
Tpr2g6041 494 Gene3D Tetratricopeptide repeat domain 201 295 IPR011990 GO:0005515
Tpr2g6041 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Tpr2g6041 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Tpr2g6041 494 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 26 494 - -
Tpr2g6041 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Tpr2g6041 494 Pfam PPR repeat family 173 219 IPR002885 -
Tpr2g6041 494 Pfam PPR repeat family 241 288 IPR002885 -
Tpr2g6041 494 Pfam PPR repeat family 311 360 IPR002885 -
Tpr2g6041 494 Pfam PPR repeat family 383 428 IPR002885 -
Tpr2g6041 494 TIGRFAM PPR: pentatricopeptide repeat domain 279 313 IPR002885 -
Tpr2g6041 494 TIGRFAM PPR: pentatricopeptide repeat domain 209 242 IPR002885 -
Tpr2g6041 494 TIGRFAM PPR: pentatricopeptide repeat domain 385 417 IPR002885 -
Tpr2g6041 494 TIGRFAM PPR: pentatricopeptide repeat domain 315 347 IPR002885 -
Tpr2g6041 494 TIGRFAM PPR: pentatricopeptide repeat domain 350 383 IPR002885 -
Tpr2g6041 494 TIGRFAM PPR: pentatricopeptide repeat domain 244 278 IPR002885 -
Tpr2g6041 494 TIGRFAM PPR: pentatricopeptide repeat domain 176 201 IPR002885 -
Tpr2g6041 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Tpr2g6041 494 PANTHER OS02G0679200 PROTEIN 26 494 - -
Tpr2g6041 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g6041 Tpr-Chr2 73447658 73450930 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g6041 133 475 Miscellaneous Gene Families AT4G11690 27.378 3.36e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g6041 - - adu:107473026 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g6041 2 73447658 73450930 Tpr2g6041 2 73447658 73450930 ECH