Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g6018 ATGGATTCTGAACTAGTCCACCCTTCAGGTGTAATTGGTTATGATGAAAATGGTTTCTCAGCACCCAAAATCACAGTTGCAGAAGGGAATGGAGAACCAAGAGCTGATGAACATCCACAAATTCCTGGTTGGTTTGCTGAACATTGTCCAATATGGCCAGGGGAAGCACACTTCTTGAAGGTAGAAAACACTTGTTTCCAAGGGAAATCTGAATTTCAAGATATGCTAGTTTTTCAGACATCAACATATGGCAAGGTATTTGTTCTTGATGGAGCACTCCAACTCACTGAAAAAGATGAATGTTCTTACCAAGAAATGATGACTCACCTTCCTCTTTGCTCAATCCCAAACCCAAAAAAGGTGCTGCTTTTTGGTGGAGGTGATGGTGGCATCCTTAGGGAAATTTCCCGACACTCTTCTGTTGAACACATTGACATTTGTGAAATTGACACTATGCTCATTGATGTTTATAAAAAATATTTCCCTGATATAGCTGTTGGATACAAGGACCCCAGAGTCAAGCTTCATGTTATAGATATAGATGGAACAGTTTTTCTGAATTCTGTCCCAAAAGGAACTTACGATGCAATTATAGTGGATGCCTTCGACCCAATAAGGCCTGATCATGAGCTATTTGAAACTCAATTCTTTGAATTGATTTCAAAAGCTCTTCGTCCCGGAGGAGTTCTATGCATCCAAGCTGAGAGCTTTTGGTACAAGTCCTTAGATATTGAACAACTTTTAATCAAAAGCCGCCAAATTTTCAAAGGCTCTAGTGACTATGCATGGACAAATGTTCCAACATATCCAAGTGGGGTCATTGGTTTCTTGCTTTGTTCCACTCAAGGTCAACATGTGGACTTCAGAAATCCAATTAACCCAATTGGTCAAGAAAATTATGGGGTATCAAAGTACCCTTTGAAGTATTACAACTCAGAGATTCATTCAGCTTCATTTTGCTTGCCATCTTTTGCCAAAAGAAATGAAGCTAAGAGTGTTGCAAAAGGAGTTTGA 1014 0.3945 MDSELVHPSGVIGYDENGFSAPKITVAEGNGEPRADEHPQIPGWFAEHCPIWPGEAHFLKVENTCFQGKSEFQDMLVFQTSTYGKVFVLDGALQLTEKDECSYQEMMTHLPLCSIPNPKKVLLFGGGDGGILREISRHSSVEHIDICEIDTMLIDVYKKYFPDIAVGYKDPRVKLHVIDIDGTVFLNSVPKGTYDAIIVDAFDPIRPDHELFETQFFELISKALRPGGVLCIQAESFWYKSLDIEQLLIKSRQIFKGSSDYAWTNVPTYPSGVIGFLLCSTQGQHVDFRNPINPIGQENYGVSKYPLKYYNSEIHSASFCLPSFAKRNEAKSVAKGV* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g6018 337 Pfam Spermine/spermidine synthase domain 100 288 - -
Tpr2g6018 337 TIGRFAM speE: spermidine synthase 44 324 IPR001045 GO:0003824
Tpr2g6018 337 Hamap Polyamine aminopropyltransferase [speE]. 43 330 IPR001045 GO:0003824
Tpr2g6018 337 PANTHER SPERMIDINE SYNTHASE 42 329 - -
Tpr2g6018 337 Pfam Spermidine synthase tetramerisation domain 43 97 IPR035246 -
Tpr2g6018 337 CDD AdoMet_MTases 120 233 - -
Tpr2g6018 337 PANTHER SPERMIDINE/SPERMINE SYNTHASE 42 329 IPR001045 GO:0003824
Tpr2g6018 337 Gene3D Vaccinia Virus protein VP39 97 332 IPR029063 -
Tpr2g6018 337 Gene3D Spermidine synthase, tetramerisation domain 27 96 IPR037163 -
Tpr2g6018 337 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 42 327 IPR029063 -
Tpr2g6018 337 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 42 281 IPR030374 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g6018 Tpr-Chr2 72881014 72883841 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g6018 K00797 - gmx:100785862 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g6018 2 72881014 72883841 Tpr2g6018 2 72881014 72883841 ECH