Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5589 ATGCAGGTTCTTCTTCCTCTTCACCACTCAGCAATCCTTATTCGCAGTTCTTGTTTGAATATAAGGCGCTTCTCTCTCGCAAACAACCATTCTCAATCCTTCAAACCTGCCTTTCCTTTTCCTCCTAATAACTACCAATGCGACGAGTCTCAGCTCCTTCACTACCTTACAAAAGGGTTACTTCACGAAGCACGAAATATGCTTCACTATTTTCCATATGGAAACCTCCACCGTCGTGTTGTTCGTTGGACCTCTTTGCTCACCAACTATGCAAAACATGGTTACCTAGAAGAAGCTCGAAACCTGTTTGACATAATGCCTCACAGAAATATTGTCACTTACAATGCAATGTTGTCTGCATATCTGCAATCTGGTATGATTGATAAGGGTCGGAGGTTTTTCAATGATATGCCGGAGAGGAATGTTGTTTCTTGGACTGCAATGGTTAGTGGGTTTGCTGATGCGGGGAGGATTGAAGATGCGAGAAAGGTGTTTGATGAAATGCCTGAGAAGAATGTTGTTTCGTGGAACTCGATGGTGGTTGGGTTGATTAGGAATGGTGATTTGGAGGAAGCGAGAAAAGTTTTTGAAAATACCCCTTTTAAAAATGTGGTGTCTTGGAATGCTATGATTGAGGGTTATGTTGAAAATGGTAGAATGGACGAAGCAAGAGTTTTGTTTGATCAAATGGGTTATTGGAATGTGATCACTTGGACTAGTATGATATCTGGGTATTGTCGTGTGGGTGATGTGGACGAGGCTTGTTGTTTATTCCGGAGTATGCCTGAGAAAAATGTTGTTTCTTGGACTGCAATGATTGGTGGGTTCACTTGGAATGGATTCTATCGAGAGGCGTTGTTGCTTTTTCTTCAGATGATGACACTTTCTGATGCAAAGCCTAATGGGGAGACCTTTGTTTCTCTTGTCTATGCATGTGCTGGCTTGGGGTTTCCTTGTCTTGGCAAGCAATTGCATGCTCAGATGATTGTTAACAGTTGGAAGCTTGATGATTATGATGGTAGGTTAGGGAGAAGTCTTGTTAGGATGTACTCTGTGTGTGGGCTGATGGACTCTGCACGCAGTGTGTTTGAAGGTGATCTGAAAATTTGTGATGATCAGTCTTTCAATTCTATGATAAATGGTTATGTTCAGGCTGGTCAGTTAGATAAGGCTCAAGAGTTGTTTGACTTGGTCCCTATTCGAAACAAATTTTCCTCGACTTGCATGATTTCTGGGTATCTTAGTGTTGGACAAGTATTGAAGGCATGCAATCTCTTTGGTGACATGCCTGAAAGTGATAAAGATCCCATTGCATGGACTTCAATGATTTATGGGTATGTCCAAAATGAGCTAATTGCTGAAGCGATCAGCTTATTTGCTAAAATGATGGCTCAAGGTGCTTCTCCTATAAATTCTACTTATGCTGTTCTTTTTGGAGCTGTGGGATCTGTTGCATATCTTGATTTGGGGAAGCAATTACATGCTATGCAGTTAAAGACTGTTTGTGATTATGAATGTGATGTGTATCTTGAGAACTCTCTGATTTCGATGTATGCAAAATGTGGGGAGATAGAGGACGCGTATAGGATATTCTCAAACATGACTGGTCGAGACAAAATTTCGTGGAACTCCATGATCATGGGCCTTTCGGATCATGGAAGAGCCGGTGAAGCTTTGAAGATGTACGAAACCATGCTTGAATTTGGGGTATACCCAGATGCTGTTACTTTCCTTGGTGTCCTAACAACATGTGCTCATGCTGGTCTTGTTGATAAAGGGTGCGAGTTGTTTAGTGTTATGATCAATGATTATGCACTTCAACCTGGCTTGGAGCATTATGTTAGCATGATCAATCTTCTGGGCCGATCTGGAAGAGTGAAGGATGCAGAGGAGTTTGTGTTGAGGCTACCTGTTGAACCAAATCATACCATTTGGGGGGCATTGATTGGAGTGTGTGGTTTGAGTAAAATAGATGTAGATGTTGCTAGGCGTGCAGCCACACGACTGCTTGAGTTGGATCCTCTGAACGCACCAGGTCATGTGACCCTTTGCAACATTTACGCTGCAAATGATTTGCACATTGAAGAGACGATTTTAAGAAGAGAAATGAGGATGAAAGGTGTTAGGAAGACACCTGGATGTAGTTGGATATTAGTGAAGGGTAGAGTTCATGTTTTCTCGTTGGGAGATAGATTAGAACCACAAGGAGAATATATGTTGCTACATATTTAA 2232 0.418 MQVLLPLHHSAILIRSSCLNIRRFSLANNHSQSFKPAFPFPPNNYQCDESQLLHYLTKGLLHEARNMLHYFPYGNLHRRVVRWTSLLTNYAKHGYLEEARNLFDIMPHRNIVTYNAMLSAYLQSGMIDKGRRFFNDMPERNVVSWTAMVSGFADAGRIEDARKVFDEMPEKNVVSWNSMVVGLIRNGDLEEARKVFENTPFKNVVSWNAMIEGYVENGRMDEARVLFDQMGYWNVITWTSMISGYCRVGDVDEACCLFRSMPEKNVVSWTAMIGGFTWNGFYREALLLFLQMMTLSDAKPNGETFVSLVYACAGLGFPCLGKQLHAQMIVNSWKLDDYDGRLGRSLVRMYSVCGLMDSARSVFEGDLKICDDQSFNSMINGYVQAGQLDKAQELFDLVPIRNKFSSTCMISGYLSVGQVLKACNLFGDMPESDKDPIAWTSMIYGYVQNELIAEAISLFAKMMAQGASPINSTYAVLFGAVGSVAYLDLGKQLHAMQLKTVCDYECDVYLENSLISMYAKCGEIEDAYRIFSNMTGRDKISWNSMIMGLSDHGRAGEALKMYETMLEFGVYPDAVTFLGVLTTCAHAGLVDKGCELFSVMINDYALQPGLEHYVSMINLLGRSGRVKDAEEFVLRLPVEPNHTIWGALIGVCGLSKIDVDVARRAATRLLELDPLNAPGHVTLCNIYAANDLHIEETILRREMRMKGVRKTPGCSWILVKGRVHVFSLGDRLEPQGEYMLLHI* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5589 743 TIGRFAM PPR: pentatricopeptide repeat domain 236 267 IPR002885 -
Tpr2g5589 743 TIGRFAM PPR: pentatricopeptide repeat domain 540 574 IPR002885 -
Tpr2g5589 743 TIGRFAM PPR: pentatricopeptide repeat domain 438 469 IPR002885 -
Tpr2g5589 743 TIGRFAM PPR: pentatricopeptide repeat domain 205 230 IPR002885 -
Tpr2g5589 743 TIGRFAM PPR: pentatricopeptide repeat domain 174 197 IPR002885 -
Tpr2g5589 743 TIGRFAM PPR: pentatricopeptide repeat domain 112 143 IPR002885 -
Tpr2g5589 743 TIGRFAM PPR: pentatricopeptide repeat domain 512 535 IPR002885 -
Tpr2g5589 743 TIGRFAM PPR: pentatricopeptide repeat domain 374 397 IPR002885 -
Tpr2g5589 743 TIGRFAM PPR: pentatricopeptide repeat domain 143 173 IPR002885 -
Tpr2g5589 743 SUPERFAMILY TPR-like 40 197 IPR011990 GO:0005515
Tpr2g5589 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Tpr2g5589 743 Pfam PPR repeat family 538 585 IPR002885 -
Tpr2g5589 743 Pfam PPR repeat family 109 142 IPR002885 -
Tpr2g5589 743 Gene3D Tetratricopeptide repeat domain 141 231 IPR011990 GO:0005515
Tpr2g5589 743 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 200 267 - -
Tpr2g5589 743 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 268 730 - -
Tpr2g5589 743 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 29 113 - -
Tpr2g5589 743 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 113 203 - -
Tpr2g5589 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 537 IPR002885 -
Tpr2g5589 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 538 572 IPR002885 -
Tpr2g5589 743 Pfam E motif 658 717 IPR046848 -
Tpr2g5589 743 Pfam PPR repeat 234 261 IPR002885 -
Tpr2g5589 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Tpr2g5589 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Tpr2g5589 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 233 IPR002885 -
Tpr2g5589 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Tpr2g5589 743 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 268 730 - -
Tpr2g5589 743 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 200 267 - -
Tpr2g5589 743 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 29 113 - -
Tpr2g5589 743 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 113 203 - -
Tpr2g5589 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 140 IPR002885 -
Tpr2g5589 743 Pfam PPR repeat 512 536 IPR002885 -
Tpr2g5589 743 Pfam PPR repeat 438 465 IPR002885 -
Tpr2g5589 743 Pfam PPR repeat 143 173 IPR002885 -
Tpr2g5589 743 Pfam PPR repeat 406 432 IPR002885 -
Tpr2g5589 743 Pfam PPR repeat 174 197 IPR002885 -
Tpr2g5589 743 Pfam PPR repeat 612 633 IPR002885 -
Tpr2g5589 743 Pfam PPR repeat 374 396 IPR002885 -
Tpr2g5589 743 Pfam PPR repeat 205 230 IPR002885 -
Tpr2g5589 743 Pfam PPR repeat 267 293 IPR002885 -
Tpr2g5589 743 Gene3D Tetratricopeptide repeat domain 401 486 IPR011990 GO:0005515
Tpr2g5589 743 Gene3D Tetratricopeptide repeat domain 232 338 IPR011990 GO:0005515
Tpr2g5589 743 Gene3D Tetratricopeptide repeat domain 487 582 IPR011990 GO:0005515
Tpr2g5589 743 Gene3D Tetratricopeptide repeat domain 49 140 IPR011990 GO:0005515
Tpr2g5589 743 Gene3D Tetratricopeptide repeat domain 583 674 IPR011990 GO:0005515
Tpr2g5589 743 Gene3D Tetratricopeptide repeat domain 339 400 IPR011990 GO:0005515
Tpr2g5589 743 SUPERFAMILY TPR-like 201 690 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5589 Tpr-Chr2 64714401 64717121 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5589 86 736 Glycoside Hydrolase AT3G49170 30.070 1.88e-80 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5589 - - gmx:102669560 1106.66