LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g5574	ATGGCTCTAACACTTCGTTCTTCAATTTCTTCCATTAGTAAGAAAGAAACAAGAATCTTCAAATCTCTTGATGATGTTTTTGCCTACAAAGTTTCTTGTCCAAAAAGTAAACCATTTTTTGGTCTCAAAGTAAAGAGTTCAATGCAAGAAACACAATTCACAACAGAAAACAACAACTCTGTAGTTAAGAAATTAAACAAGAAATGGGAGAAGACTCATGTGCCATCGGTTGCGCATAACCACGATGCTTATTTGAATAGAGTACCGGTGTTTGTGATGTTGCCATTAGACACAGTAACAATGGGAGGAAAATTGAATAAAGCAAGAGCAATGAATGCTAGTTTGATGGCACTAAAGAGTGCTGGTGTTGAAGGAGTAATGGTTGATGCTTGGTGGGGTTTGGTTGAAAAAGATGGTCCTATGAACTATAATTGGGAAGCTTATGCTGAACTTGTCCAAATGGTTCAAAAACATGGTTTGAAGCTTCAAATTGTTATGTCTTTTCATCAATGTGGTGGAAATGTTGGTGACTCTTGCAGCATTCCTCTACCTCCATGGGTGCTGGAAGAAATCAGCAAGAACCCTGATTTGGTTTACACAGACAAATTAGGAAGGAGGAATCCTGAATACATCTCATTGGGTTGTGATTCAGTGCCAGTTCTTGCAGGAAGGACACCACTTCAAGTTTACGCCGATTTCATGAGAAGCTTCCGTGACAGATTTACAGATTATTTGGGCAATGTTATCATAGAAATTCAAGTGGGACTTGGTCCTTGTGGGGAGTTGAGATATCCTTCTTATCCTGAAACTGATGGAACTTGGTCATTTCCAGGCATTGGAGAATTCCAATGCTATGACAAGTATATGAGATCTTCCTTGGAAGCATCAGCAGAGCTAATTGGGAAGAAAGAGTGGGGAACAAGTGGACCTCATGACTCAGGTCACTATAATCAAAGTCCTGAAGATACTGGATTTTTCAAAAGAGAAGGAACATGGAACACAGAATATGGAGAGTTCTTCCTTCATTGGTACTCAACCAAACTTGTTGAACATGGTGAGAAAATCCTTGTATCAGCCAAAAGCATATTTCAATCAAGTGGAGCAAAACTATCAGCAAAAATAGCTGGAATTCATTGGCATTACAATGCAAGATCACATGCAACTGAATTAACAGCAGGTTACTATAACACAAGGTTTCATGATGGTTATATACCAATAGCACAAATGTTAGCAAAACATGGTGTTATATTGAATTTCACATGCATGGAAATGAAGGATAATGAACAACCTTGTGATGCTAATTGTTCGCCGGAAGGATTAGTTAATCAAGTGAGAATGGCAACAAAGATTGCAGGTGGAGAACTTGCTGGTGAGAATGCATTGGAGAGACATGATTCAAGTGCTTATGGTCAAGTTTCATCAACAAGAGGATTAAGTGCTTTTACTTATTTAAGAATAAATAAGAGGATGCTTGAAGGTGAAAATTGGAGGCAATTTGTGGATTTTGTTGTGAGTATGTCTCATGGTGGTAAACAAAGGCTTTCAGAAGTTGATTCATATGGGACTGATCTTTATGTTGGACACATACTTAAGGAGAATGATGTTATAATAGAGATTGCTCTTGTGTGA	1629	0.3818	MALTLRSSISSISKKETRIFKSLDDVFAYKVSCPKSKPFFGLKVKSSMQETQFTTENNNSVVKKLNKKWEKTHVPSVAHNHDAYLNRVPVFVMLPLDTVTMGGKLNKARAMNASLMALKSAGVEGVMVDAWWGLVEKDGPMNYNWEAYAELVQMVQKHGLKLQIVMSFHQCGGNVGDSCSIPLPPWVLEEISKNPDLVYTDKLGRRNPEYISLGCDSVPVLAGRTPLQVYADFMRSFRDRFTDYLGNVIIEIQVGLGPCGELRYPSYPETDGTWSFPGIGEFQCYDKYMRSSLEASAELIGKKEWGTSGPHDSGHYNQSPEDTGFFKREGTWNTEYGEFFLHWYSTKLVEHGEKILVSAKSIFQSSGAKLSAKIAGIHWHYNARSHATELTAGYYNTRFHDGYIPIAQMLAKHGVILNFTCMEMKDNEQPCDANCSPEGLVNQVRMATKIAGGELAGENALERHDSSAYGQVSSTRGLSAFTYLRINKRMLEGENWRQFVDFVVSMSHGGKQRLSEVDSYGTDLYVGHILKENDVIIEIALV*	543

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr2g5574	542	ProSitePatterns	Beta-amylase active site 1.	169	177	IPR018238	GO:0000272\|GO:0016161
	Tpr2g5574	542	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	122	136	IPR001554	GO:0000272\|GO:0016161
	Tpr2g5574	542	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	143	161	IPR001554	GO:0000272\|GO:0016161
	Tpr2g5574	542	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	165	186	IPR001554	GO:0000272\|GO:0016161
	Tpr2g5574	542	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	257	279	IPR001554	GO:0000272\|GO:0016161
	Tpr2g5574	542	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	332	351	IPR001554	GO:0000272\|GO:0016161
	Tpr2g5574	542	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	368	384	IPR001554	GO:0000272\|GO:0016161
	Tpr2g5574	542	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	385	396	IPR001554	GO:0000272\|GO:0016161
	Tpr2g5574	542	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	403	426	IPR001554	GO:0000272\|GO:0016161
	Tpr2g5574	542	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	440	462	IPR001554	GO:0000272\|GO:0016161
	Tpr2g5574	542	SUPERFAMILY	(Trans)glycosidases	85	509	IPR017853	-
	Tpr2g5574	542	PANTHER	-	1	542	IPR001554	GO:0000272\|GO:0016161
	Tpr2g5574	542	Gene3D	Glycosidases	80	537	-	-
	Tpr2g5574	542	PANTHER	BETA-AMYLASE	1	542	-	-
	Tpr2g5574	542	Pfam	Glycosyl hydrolase family 14	91	502	IPR001554	GO:0000272\|GO:0016161

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g5574	Tpr-Chr2	64455403	64458331	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g5574	1	542	Glycoside Hydrolase	AT4G17090	69.078	0.0	788

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g5574	K01177		-	gmx:100786079	833.943

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr2g5574	2	64455403	64458331	Tpr2g5574	2	64455403	64458331	ECH