Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5446 ATGTTGTTTGTGAATATGCCTCTTCTATCTAGCACTGATTTGCATCGTATTTTTGAGAAGCTAGACACAAATTGCGATGGTTTTGTAAGTCTTGAGGAGCTAAATTGGGTGCTCCAAAGAATAGGTAGTAATAATAATTCTCAATTTAGTTTAGATGAGCTTGAATCTCTTGTGGAAAAAAAGAGCTTAGACTTCAATGAATTCTTGTTCTTTTACAACTCTATATCAAAACAAAACAATGGAGAAAACAAAGGAGGAGGTGATGATGATGAGTTGGAGAGAGATCTTGTGAAGACTTTTAAAGTGTTTGATTTGGATGGAGATGGATTCATTACAAGCCAAGAGCTTGAGTGTGTTTTGAAGAGACTTGGATTCTTGGATGAAAGAAGTGGTAAGGATTGTAGAAGCATGATTAGGTTTTATGATACCAATTTAGATGGTAGGCTTGATTTTCAGGAATTCAAGAACATGATGTTGCTTACATCTACATGA 492 0.3496 MLFVNMPLLSSTDLHRIFEKLDTNCDGFVSLEELNWVLQRIGSNNNSQFSLDELESLVEKKSLDFNEFLFFYNSISKQNNGENKGGGDDDELERDLVKTFKVFDLDGDGFITSQELECVLKRLGFLDERSGKDCRSMIRFYDTNLDGRLDFQEFKNMMLLTST* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5446 163 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 8 161 - -
Tpr2g5446 163 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 8 161 - -
Tpr2g5446 163 Pfam EF hand 17 34 IPR002048 GO:0005509
Tpr2g5446 163 Gene3D - 84 163 - -
Tpr2g5446 163 SUPERFAMILY EF-hand 13 160 IPR011992 -
Tpr2g5446 163 ProSiteProfiles EF-hand calcium-binding domain profile. 129 163 IPR002048 GO:0005509
Tpr2g5446 163 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Tpr2g5446 163 ProSitePatterns EF-hand calcium-binding domain. 104 116 IPR018247 -
Tpr2g5446 163 SMART efh_1 95 123 IPR002048 GO:0005509
Tpr2g5446 163 SMART efh_1 13 41 IPR002048 GO:0005509
Tpr2g5446 163 SMART efh_1 133 161 IPR002048 GO:0005509
Tpr2g5446 163 ProSiteProfiles EF-hand calcium-binding domain profile. 91 126 IPR002048 GO:0005509
Tpr2g5446 163 CDD EFh 95 158 IPR002048 GO:0005509
Tpr2g5446 163 ProSitePatterns EF-hand calcium-binding domain. 22 34 IPR018247 -
Tpr2g5446 163 Gene3D - 10 78 - -
Tpr2g5446 163 Pfam EF-hand domain pair 96 158 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5446 Tpr-Chr2 61401469 61402307 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5446 4 159 EF-hand Containing Proteins AT1G21550 44.025 1.52e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5446 K13448 - gmx:100527117 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5446 2 61401469 61402307 Tpr2g5446 2 61401469 61402307 ECH