Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5427 ATGTACCCATTTTTTAAGCAAACAAAGTGTCTTCACTCTTCACTTTCTCATTCGTCTATTCTCCTAGACCACTGTTTATCTCATAATAAATCCGCAAACTTTCTCAAAATTGTTCATGCCCACTTCCTCAAATTAGGTCTTAATACCTATACCTATTTGGGTAATCGCTGTATCAATCTTTATACTGAATTCGGTTACATTAATGATGCCTTGAAGGTGTTTGATGATATTTCTTACAAGAATTCAACGTCCTGGAACATTTGCTTAAAAGGGTTGTTCAAAAGTGCTCAATTTGGTAAGGCACGCTACATGTTTGATAGAATGCCTGTTAGAGATGTTGTTAGTTGGAACACCATGATTTCGGGTTATGCTTCATGTGGGTTTTCTAGTCATGCATTGGAGCTTTTTGTTGAAATGCAAGGTACTGGTGTGAGACCGAGTGGGTTTACTTTTTCGATTTTAACATCGCTTGTGTCGAGTGCTTGTCATGCTAAGCAGGTTCATGGTAGGATGATTAGAAGTGGGATGGATTTGTTTAATGTGGTGCTTGGAAATTCGTTGATAACTATGTATGGGAAGTTTGGTCTTGTTGATTATTGTTTTGCCGTGATTTTGACTATGAAGCAGCTTGATGTTATATCTTGGAACTCTCTGATATGGGCCTGTCATAAAGCTGGGCGTCAAGAGCTTGCTCTAGAGCAGTTCTGTTCAACGAGAGCTGCGGAGTTGTTAGCTGATGAGTTTTCGTGTTCAACATTGATGAGTGTTTGTACATACTTGCGAGATTTGGAAAAGGGTAAGGAGGTTTTTGCCTTTTGTTTCAAGGTGGGATTTGTTTATAATAGCATTGTGTCAAGTGCTGCTATTGATCTCTTTTCCAAATGCAACAGATTGGAGGACGCTGTGCGGCTATTTAAAGAACAAGAACAATGGGATTCAGCTCTATGCAATTCCATGATTTCATGTTATGCTAGACACGATTTGGGGGAAGATGCTATGCGGCTCTTTGTGCTGACCTTGAGAAAGAATATCAGACCAACGGAATACACGGTTAGCTGTCTTCTGAATTCTGTTTCCATTTTCTTGCCAGTAGAAGTGGGTAATCAAATCCATGCTTTGATTCCTAAATTGGGTTTCGAGTCAGATGCAGTTGTTGCCAATTCACTTGTTGATATGTATGGTAAATTTGGATTTATTGATGAAGCCTTGAATATATTCAACAAAATAAAAACAAAAGATTTGGTGTCATGGAACACTATAATGATGGGACTGTCTTACAATGGCAAAGTGTCTGCGACCATGGAACTCTTCAAGGAATTGATAAGAGTTGGAATGCCACCTGATCGAATAACATTTGCTGCTGTTCTACTAGCATGCAACAATGGGAGCTTGGTTGATGAAGGAATTGAAATATTTTCCCTAATGGAGATGGAATTTGGAGTAAAAGCAGAGGAAGAACATTATTCATATATCGTGGAGATGTTATGTAGAGCTGGTAAGCTTGAAGAAGCCATCATAATTGTGGAAAATATGCCGTATAGACCTACCCCTGACATTTGGAGGTCAATTCTTTCTGCTTGTGCAATGTATGCAGACTTGCAAGCTATTGAAATAGTTGCGACGAAAATAATGGAGAGGTCGCCACAGACAACCTTACCTTACTTGGTGTTGGCTCATATATATCAGATGAGTGACAGATGGGAGAGCACGGTTCGAGTGAGGAAGGCTATGGAAAATAGAGGTACATCTCCTCACTTGAAAAAGGAGCGTAAGATCAAAGACTTGGAATAG 1791 0.3942 MYPFFKQTKCLHSSLSHSSILLDHCLSHNKSANFLKIVHAHFLKLGLNTYTYLGNRCINLYTEFGYINDALKVFDDISYKNSTSWNICLKGLFKSAQFGKARYMFDRMPVRDVVSWNTMISGYASCGFSSHALELFVEMQGTGVRPSGFTFSILTSLVSSACHAKQVHGRMIRSGMDLFNVVLGNSLITMYGKFGLVDYCFAVILTMKQLDVISWNSLIWACHKAGRQELALEQFCSTRAAELLADEFSCSTLMSVCTYLRDLEKGKEVFAFCFKVGFVYNSIVSSAAIDLFSKCNRLEDAVRLFKEQEQWDSALCNSMISCYARHDLGEDAMRLFVLTLRKNIRPTEYTVSCLLNSVSIFLPVEVGNQIHALIPKLGFESDAVVANSLVDMYGKFGFIDEALNIFNKIKTKDLVSWNTIMMGLSYNGKVSATMELFKELIRVGMPPDRITFAAVLLACNNGSLVDEGIEIFSLMEMEFGVKAEEEHYSYIVEMLCRAGKLEEAIIIVENMPYRPTPDIWRSILSACAMYADLQAIEIVATKIMERSPQTTLPYLVLAHIYQMSDRWESTVRVRKAMENRGTSPHLKKERKIKDLE* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5427 596 Gene3D Tetratricopeptide repeat domain 7 160 IPR011990 GO:0005515
Tpr2g5427 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 412 IPR002885 -
Tpr2g5427 596 Pfam PPR repeat family 111 154 IPR002885 -
Tpr2g5427 596 Pfam PPR repeat family 412 459 IPR002885 -
Tpr2g5427 596 Gene3D Tetratricopeptide repeat domain 262 360 IPR011990 GO:0005515
Tpr2g5427 596 Gene3D Tetratricopeptide repeat domain 161 261 IPR011990 GO:0005515
Tpr2g5427 596 Gene3D Tetratricopeptide repeat domain 364 463 IPR011990 GO:0005515
Tpr2g5427 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Tpr2g5427 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Tpr2g5427 596 PANTHER OS07G0578800 PROTEIN-RELATED 1 581 IPR045215 GO:0003723|GO:0009451
Tpr2g5427 596 PANTHER OS03G0435200 PROTEIN 1 581 - -
Tpr2g5427 596 Gene3D Tetratricopeptide repeat domain 464 594 IPR011990 GO:0005515
Tpr2g5427 596 TIGRFAM PPR: pentatricopeptide repeat domain 84 113 IPR002885 -
Tpr2g5427 596 TIGRFAM PPR: pentatricopeptide repeat domain 415 448 IPR002885 -
Tpr2g5427 596 TIGRFAM PPR: pentatricopeptide repeat domain 316 347 IPR002885 -
Tpr2g5427 596 TIGRFAM PPR: pentatricopeptide repeat domain 114 147 IPR002885 -
Tpr2g5427 596 Pfam PPR repeat 287 307 IPR002885 -
Tpr2g5427 596 Pfam PPR repeat 487 511 IPR002885 -
Tpr2g5427 596 Pfam PPR repeat 185 211 IPR002885 -
Tpr2g5427 596 Pfam PPR repeat 316 340 IPR002885 -
Tpr2g5427 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 146 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5427 Tpr-Chr2 61175731 61178388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5427 98 580 Glycoside Hydrolase AT3G49170 30.986 3.79e-73 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5427 - - gmx:102663822 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5427 2 61175731 61178388 Tpr2g5427 2 61175731 61178388 ECH