Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5404 ATGAAACATGCAACATGTCACAAAATCGCAGAAATTTTCAACTCATCAAATTGGTCTCGTTCAATAAGCAACAACATTACTCAGGAAACATCATTCAGAACTGCTCTTGTTTTGTACAAACAATCTCGGCACCAAGGAACACACGACCCTGCCGTGATCCCTAAGTTACTCAAAGCATGTGATTCTCTTCCCTTCCTTCATTACGTTAAAGGTCTACATGCAGAGTCCATCAAAGCAGGTTCAAACATCGACGTATTCATTGGAACTGCAATTGTTGCAGCTTATGCAAAATGCTGCGTTGTTTTGGATGCACGCAAGCTGTTTGATGTTATGCCTGAAAGAAATGTTGTGACTTGGAATGCAATGATTGGTGGGTATTTGAGAAATGGTGACACTGATTCTGCTTTGATTGCTTTTGAGGAAATTCCAGGGAAAACTAGGGTGAGTTGGAGTCAGATGATTGGTGGGCTTGCTAGAAATGGTGACACTGTAACTGCTAGGAGGTTGTTTGATAAGGTTCCATGTGAGTTGAAGGATGTGGTGATATGGACTGTGATGGTTGATGGGTATGCTAAGAAAGGGGAAATGGAAGCTGCAAGAGAGGTTTTTGAGTTAATGCCGGAAAGGAATTGTTTTGTTTGGTCATCTATGGTTTGTGGGTATTGCAAGAAGGGTAGTGTCTTGGAGGCTGAGGCTATTTTTCGACGGATTCCGGTTCGGAATTTGGAGATTTGGAATTCAATCATTGCTGGTTATGTGCAAAATGGATTTGGTGAGAAAGCATTGCAGGCTTTTGAGGAAATGAGAGTTGAAGGGTTTGAGCCAGACGAGTTCACTGTTGTTAGTGTTTTATCTGCTTGTGCTCAGCTTGGAGACCTGCATATTGCCAAACAAATCCACAATATGATAGAATATAAAGGATTGGTTGTGAACCAGTTTGTTTTAAGTGGATTGGTTGACATGTATTCGAAATGTGGGGACTTGGTTAATGCAAGGTTGGTATTTGAAAATTGCAATGGGAGGAATGTTTTCTGCTGGAATGCTATGATTTCGGGTTTTGCTATCAATGGAAAATGCAAGGAGGTCCTTGAGTATTTGAGAAGGATGGAGAAGTCAAACATAAGACCTGATGCTGTCACATTTATTTCTGTACTCTCAGCTTGTGCTCATGGAGGTTTGGTGAGTGAAGCTTTGGAAGTAATATCTAAAATGGAGGCATATGGAATTGAAATAGGCATCAGGCACTATGGATGCATGGTTGACCTCTTGGGGAGAGCAGGGAGGTTAAAGGAGGCATATGAGTTAATAAAAAGAATGCCAGTGAAACCTAATGAAACAGTTTTGGGGTCAATGATTGGTGCTTGCTGGATTCATTCAGATATGAAAATGGCAGAACAAGTTATTAAGATGATTGGTGCATACTCTGCTACATGTGATAATTCCCACAATGTGCTTCTGTCAAATATCTACGCAGCTTCAGAAAAATGGGAGAATGCTGAAATGGTAAGGAGGAACATGGTTAATGAAGGGTCTGAAAAGATAACAGGGTGTAGTTCAATCATCCTAGGTAACTCTGATGTTGATTTAAGTATAAGTAAAGAAGTTTCACGTCAAATGAACAGGCAAAAGGCTGATGAAGGGTTATATGCAGATGCAGCCTGCAGTGGCGTGGTCTGGAAGAGCCGTTTTATTGGCGCAGGCGGTTCTGTTATGGTGCATTCTGTTTGGTCTGCAAAAACTTCCGATGGCTTCAAATTGTGTTGCTGCATGTATTCGGGTTTTGTGGATGGAAGCCGAGTTGTTGCAGCTTTACTAGTAGTGATTTACACTAATATAGCTTGGGAGGCTTCAAGGAGTTAA 1860 0.4129 MKHATCHKIAEIFNSSNWSRSISNNITQETSFRTALVLYKQSRHQGTHDPAVIPKLLKACDSLPFLHYVKGLHAESIKAGSNIDVFIGTAIVAAYAKCCVVLDARKLFDVMPERNVVTWNAMIGGYLRNGDTDSALIAFEEIPGKTRVSWSQMIGGLARNGDTVTARRLFDKVPCELKDVVIWTVMVDGYAKKGEMEAAREVFELMPERNCFVWSSMVCGYCKKGSVLEAEAIFRRIPVRNLEIWNSIIAGYVQNGFGEKALQAFEEMRVEGFEPDEFTVVSVLSACAQLGDLHIAKQIHNMIEYKGLVVNQFVLSGLVDMYSKCGDLVNARLVFENCNGRNVFCWNAMISGFAINGKCKEVLEYLRRMEKSNIRPDAVTFISVLSACAHGGLVSEALEVISKMEAYGIEIGIRHYGCMVDLLGRAGRLKEAYELIKRMPVKPNETVLGSMIGACWIHSDMKMAEQVIKMIGAYSATCDNSHNVLLSNIYAASEKWENAEMVRRNMVNEGSEKITGCSSIILGNSDVDLSISKEVSRQMNRQKADEGLYADAACSGVVWKSRFIGAGGSVMVHSVWSAKTSDGFKLCCCMYSGFVDGSRVVAALLVVIYTNIAWEASRS* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5404 619 Gene3D Tetratricopeptide repeat domain 145 209 IPR011990 GO:0005515
Tpr2g5404 619 Gene3D Tetratricopeptide repeat domain 23 144 IPR011990 GO:0005515
Tpr2g5404 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Tpr2g5404 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Tpr2g5404 619 Gene3D Tetratricopeptide repeat domain 210 301 IPR011990 GO:0005515
Tpr2g5404 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Tpr2g5404 619 PANTHER OS01G0913400 PROTEIN-RELATED 14 520 - -
Tpr2g5404 619 Pfam PPR repeat family 242 288 IPR002885 -
Tpr2g5404 619 Pfam PPR repeat family 341 389 IPR002885 -
Tpr2g5404 619 Gene3D Tetratricopeptide repeat domain 314 551 IPR011990 GO:0005515
Tpr2g5404 619 TIGRFAM PPR: pentatricopeptide repeat domain 117 136 IPR002885 -
Tpr2g5404 619 TIGRFAM PPR: pentatricopeptide repeat domain 213 241 IPR002885 -
Tpr2g5404 619 TIGRFAM PPR: pentatricopeptide repeat domain 181 211 IPR002885 -
Tpr2g5404 619 TIGRFAM PPR: pentatricopeptide repeat domain 379 411 IPR002885 -
Tpr2g5404 619 TIGRFAM PPR: pentatricopeptide repeat domain 344 378 IPR002885 -
Tpr2g5404 619 TIGRFAM PPR: pentatricopeptide repeat domain 416 439 IPR002885 -
Tpr2g5404 619 TIGRFAM PPR: pentatricopeptide repeat domain 244 277 IPR002885 -
Tpr2g5404 619 PANTHER BNACNNG13520D PROTEIN 14 520 - -
Tpr2g5404 619 Pfam PPR repeat 117 142 IPR002885 -
Tpr2g5404 619 Pfam PPR repeat 148 172 IPR002885 -
Tpr2g5404 619 Pfam PPR repeat 181 211 IPR002885 -
Tpr2g5404 619 Pfam PPR repeat 213 240 IPR002885 -
Tpr2g5404 619 Pfam PPR repeat 415 440 IPR002885 -
Tpr2g5404 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 115 149 IPR002885 -
Tpr2g5404 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Tpr2g5404 619 Pfam E motif 458 520 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5404 Tpr-Chr2 60864630 60867591 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5404 49 524 Glycoside Hydrolase AT3G49170 31.875 5.04e-64 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5404 - - mtr:MTR_3g089880 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5404 2 60864630 60867591 Tpr2g5404 2 60864630 60867591 ECH