Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5402 ATGAGTCATCGTGGTGGAATGGACGATGAAGACGACGACGACGATTACGAGGAGCAGGTTGCCGATTTCGATGAAGAGGAAGTGGATGAAGAAGAGGAAGATAGAAGCGGTGGAAAGAAACGGAGAAGATCTAGTTTCATTGACGATGATGCGGAGGAGGTTGATGAAGATGAGGAAGAAGAAGAAGAAGATGATTATGAGGATGAGGATTATGGTGGGAAAAGCAGCCGTAAACGACAGAAATCGAAGAAGGGTTCCGCTTCGAATTTCTTTGATATTGAGGCTGCTGTTGATTCTGATGAAGAGGAGGAAGAGGAAGAAGGAGATGATGATTTCATTGTTGAGACTGGATCTGATCTGCCCTATGACGATGATAATAGAGGGAGGGCACGTCACAGACTGCCACCCCACCAAGAAGACCATGAAGATCTTGAAGCAATGGCAAGAAGCATACAAGAGAGATATGGAAAGCAGCGGATGGCAGATTATGATGAAGAAACTACAGATGTAGAACAGCAAGCACTTTTGCCATCCGTGAGAGACCCAAAGCTGTGGATGGTCAAATGTGCGATTGGCCGTGAGCGTGAAACAGCTGTTTGTCTCATGCAAAAGTACATAGATAAGGGGTCTGAATTGCAAATCAGATCTGCTATTGCTCTTGATCATCTCAAAAATTATATATATGTGGAAGCAGATAAAGAAGCTCATGTTAGAGAGGCTTGCAAAGGTCTTCGCAATATATTTGGACAAAAAATAACGCTTGTTCCAATAAGAGAAATGACCGATGTGCTGTCGGTTGAAAGCAAAGCCATTGATCTTGCTAGAGGTACCTGGGTTAGAATGAAGATTGGGACATACAAGGGGGACCTCGCCAAAGTAGTGGATGTGGATAATGTGCGGCAGAGGGTTACTGTGAAACTAATTCCGCGGATAGACTTACAGGCTCTCGCAAACAAATTGGAAGGTAGAGAAGTTGTGAAAAAGAAGGCATTTGTCCCCCCACCTCGGTTTATGAACGTCGATGAAGCTAGGGAACTGCATATCCGTGTGGAGCATAGGCGTGATGCCTATGGGGAACGGTTTGAAGCCTTTGGAGGCATGATGTTCAAAGATGGATTCTTATACAAAACTGTATCTATTAAATCCATTAGTGCTCAGAGCATCAAACCTACGTTTGACGAGCTCGAAAAATTTCGTAAACCGGGTGAGAGTGGAGATGGTGATGTAGCCAGTCTGTCAACTCTGTTTGCGAACAGAAAGAAAGGGCATTTCATGAAGGGTGATGCTGTTATTGTCATCAAGGGAGATTTGAAGAATTTGAAGGGATGGGTGGAGAAAGTGGATGAAGATAATGTTCATATAAGACCAGAAATTAAAGATCTTCCTAAAACTCTTGCAGTAAATGAAAAGGAACTTGTTAAATATTTTGAACCTGGAAACCATGTTAAAGTAGTTACTGGTGCTCAAGAGGGTGCAACTGGCATGGTTGTGAAGGTGGAACAGCATGTCCTGATCTTAATATCTGATACCACAAAGGAGCATATCCGCGTGTTTGCAGATGATGTTGTAGAGAGCTCTGAGGTAACCACCGGTGTGACTAGAATTGGGGACTATGAACTTCGTGATCTTGTATTGCTAGATAATTTGAGTTTTGGTGTGATAATCCGTGTAGAAAGTGAGGCATTTCAGGTTCTTAAGGGGGTTCCTGACAGACCTGAAGTCGTGCTTGTTAAATTAAGAGAGATCAAGTGTAAGATAGAGAAGAAAATAAGTGTGCAGGATAGGTTTAAGAATACAATATCATCAAAAGATGTTGTGAAGATAATTGATGGTCCCTGCAGAGGCAAACAAGGTCCCGTGGAGCACATATATAGAGGAATCTTGTTCATCTTTGATCGCCATCATCTTGAACATGCAGGCTTTATATGTGTTAAGGCCCACTCGTGTGTAGTTGTGGGAGGTTCGCGCTCCAATGGTGACAGAAATGGTGATGCACACACACGATTCAACGGTCTTAGAACTCCATCTCGCATTCCACAGTCCCCAAGTAGGGTTCCTCGCGGAAGGCCTTCATCTGATTCTGGAGGGAGGCATAGGGGTGGAAGGGGTCATGATGGTTTGACTGGTGCCACTGTTAAAGTACGCCAAGGTTCCTATAAAGGTTATCGTGGGCGTGTTATTGAAGTCAAAGGAACATCTGTTCGGGTTGAATTGGAGTCCCAAATGAAGGTTGTAACAGTTGACCGCAATCATATAACTGACAATATAGCTGTTACTCCACAACGTGAAACATCTCGATATGGGATGGGAAGTGAAACCCCAATGCATCCATCTCGAACTCCTTTGCATCCATATATGACTCCGATGAGAGATCCTGGAGCAACTCCAATCCATGATGGAATGAGGACACCTATGCGTGACCGAGCTTGGAATCCTTATGCACCAATGAGTCCTCCTAGGGATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGTGCCAGTCCACAGTACCAGCCTGGAAGCCCTCCTTCCCGGCCATATGAAGCCCCAACTCCTGGTGCTGGGTGGGCTAGTACTCCCGGTGGCAATTATAGTGAGGCCGGAACGCCACGTGACAGTTCTGCCTATGCGAATGCACCGAGCCCATATTTACCATCAACACCAGGTCAGCCTATGACACCAAATTCCGCGTCTTATCTTCCTGGCACCCCTGGAGGACAGCCTATGACTCCAGGAACGGGTGGTCTGGACATGATGTCACCAGTATTAGGTGGCGACACAGAAGGGCCTTGGTTTATGCCAGACATATTGGTCAATGTACACAGGGCCGGAGATGAGTCTGTTGGAGTTATAAAAGAAGTTCTACCGGATGGTTCTTATAAGGTAGGTCTTGGGTCTAGCGGAAATGGTGAAACAATAACAGCCCTTCCCGCTGAAATGGAGGCTGTAGTTCCAAGGAAATCCGATAAAATAAAGATAATGGGCGGGGCGTTGCGCGGTTCCACCGGCAAGTTGATTGGTGTTGATGGCACTGATGGCATTGTAAAAGTAGATGACACATTGGATGTGAAGATTTTAGACTTGGTTATTTTGGCAAAATTAGCTCAGTCGTGA 3114 0.4528 MSHRGGMDDEDDDDDYEEQVADFDEEEVDEEEEDRSGGKKRRRSSFIDDDAEEVDEDEEEEEEDDYEDEDYGGKSSRKRQKSKKGSASNFFDIEAAVDSDEEEEEEEGDDDFIVETGSDLPYDDDNRGRARHRLPPHQEDHEDLEAMARSIQERYGKQRMADYDEETTDVEQQALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSAIALDHLKNYIYVEADKEAHVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARGTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDAYGERFEAFGGMMFKDGFLYKTVSIKSISAQSIKPTFDELEKFRKPGESGDGDVASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEDNVHIRPEIKDLPKTLAVNEKELVKYFEPGNHVKVVTGAQEGATGMVVKVEQHVLILISDTTKEHIRVFADDVVESSEVTTGVTRIGDYELRDLVLLDNLSFGVIIRVESEAFQVLKGVPDRPEVVLVKLREIKCKIEKKISVQDRFKNTISSKDVVKIIDGPCRGKQGPVEHIYRGILFIFDRHHLEHAGFICVKAHSCVVVGGSRSNGDRNGDAHTRFNGLRTPSRIPQSPSRVPRGRPSSDSGGRHRGGRGHDGLTGATVKVRQGSYKGYRGRVIEVKGTSVRVELESQMKVVTVDRNHITDNIAVTPQRETSRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYAPMSPPRDNWEDGNPGSWGASPQYQPGSPPSRPYEAPTPGAGWASTPGGNYSEAGTPRDSSAYANAPSPYLPSTPGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVLGGDTEGPWFMPDILVNVHRAGDESVGVIKEVLPDGSYKVGLGSSGNGETITALPAEMEAVVPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQS* 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5402 1037 MobiDBLite consensus disorder prediction 658 710 - -
Tpr2g5402 1037 MobiDBLite consensus disorder prediction 673 688 - -
Tpr2g5402 1037 Gene3D - 272 314 IPR014722 -
Tpr2g5402 1037 MobiDBLite consensus disorder prediction 8 32 - -
Tpr2g5402 1037 Gene3D - 163 265 IPR036735 GO:0006355
Tpr2g5402 1037 CDD KOW_Spt5_6 979 1035 IPR041980 -
Tpr2g5402 1037 Pfam KOW motif 478 503 IPR005824 -
Tpr2g5402 1037 PANTHER SUPPRESSOR OF TY 5 32 1035 IPR039659 GO:0006357|GO:0032784
Tpr2g5402 1037 MobiDBLite consensus disorder prediction 33 49 - -
Tpr2g5402 1037 CDD NGN_Euk 183 265 IPR039385 -
Tpr2g5402 1037 MobiDBLite consensus disorder prediction 50 69 - -
Tpr2g5402 1037 PIRSF Spt5 2 1037 IPR017071 GO:0006357|GO:0032784
Tpr2g5402 1037 MobiDBLite consensus disorder prediction 95 118 - -
Tpr2g5402 1037 ProSitePatterns Ribosomal protein L24 signature. 427 444 IPR005825 GO:0003735|GO:0005840|GO:0006412
Tpr2g5402 1037 SMART kow_9 705 732 IPR005824 -
Tpr2g5402 1037 SMART kow_9 475 502 IPR005824 -
Tpr2g5402 1037 SMART kow_9 599 626 IPR005824 -
Tpr2g5402 1037 SMART kow_9 272 299 IPR005824 -
Tpr2g5402 1037 SMART kow_9 984 1011 IPR005824 -
Tpr2g5402 1037 SMART kow_9 423 450 IPR005824 -
Tpr2g5402 1037 CDD KOW_Spt5_1 276 313 IPR041973 -
Tpr2g5402 1037 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 32 1035 - -
Tpr2g5402 1037 MobiDBLite consensus disorder prediction 834 859 - -
Tpr2g5402 1037 SUPERFAMILY Translation proteins SH3-like domain 467 526 IPR008991 -
Tpr2g5402 1037 CDD KOW_Spt5_3 475 525 IPR041976 -
Tpr2g5402 1037 Gene3D - 418 475 IPR014722 -
Tpr2g5402 1037 CDD KOW_Spt5_2 424 474 IPR041975 -
Tpr2g5402 1037 MobiDBLite consensus disorder prediction 1 127 - -
Tpr2g5402 1037 CDD KOW_Spt5_5 707 753 IPR041978 -
Tpr2g5402 1037 Pfam Early transcription elongation factor of RNA pol II, NGN section 183 264 IPR005100 -
Tpr2g5402 1037 Gene3D - 691 755 IPR014722 -
Tpr2g5402 1037 Gene3D - 478 527 IPR014722 -
Tpr2g5402 1037 SMART nusgn_4 181 267 IPR006645 GO:0140673
Tpr2g5402 1037 CDD KOW_Spt5_4 603 645 IPR041977 -
Tpr2g5402 1037 Pfam Spt5 transcription elongation factor, acidic N-terminal 90 177 IPR022581 -
Tpr2g5402 1037 SUPERFAMILY Translation proteins SH3-like domain 416 454 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5402 Tpr-Chr2 60844175 60851575 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5402 K15172 - gmx:100801380 1715.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5402 2 60844175 60851575 Tpr2g5402 2 60844175 60851575 ECH