Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5391 ATGGTTCTCACATCATCGGCGCGCGATTACATCAACCGCATCTTACAGGATATCTCCGGCATGAAAGTTCTCATCCTTGATTCTCAAACGGTTAGTATTGTGAGTGTTGTGTACTCACAATCAGAGCTTCTTCAAAAAGAGGTGTTTTTGGTAGAGTTGGTGGATTCAATTTCCAAGTCAAGCGAACCAATGTCACATCTCAAGGCCATTTACTTCCTTCGACCTACAGCAGAGAATATCCAGTATATGCGCCGTCAGCTGGCTAGTCCTAGATTCGGAGAGTATCACCTATTTTTCTCCAACATAATGAAGGACCATCATATTCACTTACTTGCTGATTCAGATGAACAGGAAGTTGTCCAGCAAGTTCAGGAGTTTTATGCAGATTACGTTGCTATTGATCCTTATCATTTCACTTTCCACATGCCTTCAAATTACATATATATGCTTCCAGCTGTTGTAGATCCTTCAGCAGTGCAGCATTTCAGTGATCGGGTTGTTGAAGGTCTTGCCGCTGTTTTTTTGACATTAAAACGGAGACCAGTAATTAGATATCAAAGAACATCTGACATTGCAAAAAGAATAGCACAGGAAGCATCTAAACTGATGTACCAAGAGGAAAGTGGTCTTTTTGATTTTAGGCGAATGGAAGTTTCTCCGTTGTTGTTGGTGATTGATAGGAGGGATGATCCTGTAACCCCATTGCTAAATCAATGGACCTATCAGGCTATGGTTCATGAATTGATAGGAATCCAAGACAACAAAGTGGATGTCAAATCCATTGGTAAATTTCCAAAGGATCAGGAGGAGGTTGTGCTGTCATCAGAACAAGATTCCTTTTTCAAAGCTAACATGTACGATAATTTCGGAGATATTGGTATGAATATCAAGCGTCTGGTTGATGAATTTCAGCAAGTGGCACAGAGTAATCAGAACATCCAAACAGTAGAGGACATGGCCAAATTTGTTGACAACTACCCTGAGTACAGGAAAATGCACGGGAATGTGACAAAACATGTGACTTTGGTAACAGAAATGAGCAAGATAGTTGAAGCGCGGAAACTTATGTTAGTTTCACAAACAGAACAGGAGTTGGCTTGCAATGGAGGGCAAGGAGCTGCTTTTGAGGCAGTGACAAATCTACTAAACGATGAAAGCATATCAGATATGGACCGACTACGTTTGGTCATGCTATATGCTTTGCGATATGAGAAGGACAGTCCTGTTCAATTAATGCAGCTTTTCAACAAACTGGCTTCCAGATCTGCCAAATACAAACCCGGGCTTGTCCAGTTTCTTTTGAAGCAGGCTGGTGTTGACAAGAGAACTGGTGATCTTTATGGAAATCGAGATCTAATGAACATTGCCCGTAACATGGCTCGTGGACTGAAGGGTGTTGAGAACGTTTACACCCAGCACCAGCCGCTTCTGTTCCAAATCATGGAAAGCATCGTCAAAGGGCGGTTGAAAGATGTGGACTACCCATTTTTTGGGAATCACTTTCAACAAGGAAGGCCCCAAGACGTAATTATCTTCATTGTTGGTGGGACAACATATGAGGAGTCACGGTCTGTTGCTCTACAAAATGCCAGCAATACAGGCGTTCGGTTTATACTTGGTGGATCTTCTGTTCTTAATTCTAAAAGGTTTTTCAAGGACTTGGAAGAAGCTCAAAGGGTAGCTCGTTCTAGCACCTCTGTTTGA 1704 0.4202 MVLTSSARDYINRILQDISGMKVLILDSQTVSIVSVVYSQSELLQKEVFLVELVDSISKSSEPMSHLKAIYFLRPTAENIQYMRRQLASPRFGEYHLFFSNIMKDHHIHLLADSDEQEVVQQVQEFYADYVAIDPYHFTFHMPSNYIYMLPAVVDPSAVQHFSDRVVEGLAAVFLTLKRRPVIRYQRTSDIAKRIAQEASKLMYQEESGLFDFRRMEVSPLLLVIDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDVKSIGKFPKDQEEVVLSSEQDSFFKANMYDNFGDIGMNIKRLVDEFQQVAQSNQNIQTVEDMAKFVDNYPEYRKMHGNVTKHVTLVTEMSKIVEARKLMLVSQTEQELACNGGQGAAFEAVTNLLNDESISDMDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTGDLYGNRDLMNIARNMARGLKGVENVYTQHQPLLFQIMESIVKGRLKDVDYPFFGNHFQQGRPQDVIIFIVGGTTYEESRSVALQNASNTGVRFILGGSSVLNSKRFFKDLEEAQRVARSSTSV* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5391 567 Gene3D - 353 474 - -
Tpr2g5391 567 Gene3D - 155 555 IPR027482 -
Tpr2g5391 567 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 45 3 555 - -
Tpr2g5391 567 SUPERFAMILY Sec1/munc18-like (SM) proteins 3 556 IPR036045 -
Tpr2g5391 567 Pfam Sec1 family 22 553 IPR001619 GO:0016192
Tpr2g5391 567 Gene3D - 2 128 IPR043154 -
Tpr2g5391 567 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 3 555 IPR001619 GO:0016192
Tpr2g5391 567 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 238 351 IPR043127 -
Tpr2g5391 567 PIRSF VPS45_Sec1 1 565 IPR001619 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5391 Tpr-Chr2 60743191 60750375 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5391 K12479 - gmx:100782786 1033.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5391 2 60743191 60750375 Tpr2g5391 2 60743191 60750375 ECH