Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5012 ATGGAGGAGTTACCGGAGTGTCCGGTGTGTCTCCAAAGCTACGACGACGGAACCGCGATTCCACGAGTTCTATCATGCGGCCACACCGTTTGTGAAGTTTGTCTTGTTGAGCTTCATCAGCGATTTCCGAACACAATTCGTTGCCCAGCGTGTACACAGCTTGTTAAATACTCTCCCAAACAAGGTCCTTCTTCTCTTCCAAAAAATATTGATCTTCTTCGACTCTGCCTTCAACAACAAGACTCTTCAGATGAAAACCAGTTGCGGAAATTGAATCAACAGTCCTCGATCAACGATGAATATTCAGCTCGATTTTGGTCTGATGAGTTTTATGTTGCTTGGAAGGATTGGATTCTTCCGCACGACGCCGTTTCGGTTGGCGAGGATGGTTTTGGTTTGTTCAGTTCGAGTTCTAAGGGTAGGGTTTGCTTTGGAGTTAACCATACGGTGAGTCTTGTTCCGGTTGTTACTTTGCATACTGTTAGTGATTTGAAGTTTAAGTTTAGTTATGTTGCTTGGGTTATTAAGTGTTTGGAGGGATTGACTGAGGCTGCGAGGGACGCTTTATGTTTGATTCTAGAAGCTTCCGTGAGGCAGAGTAGGATTTGCAGGGTTTATGGGCTGTGGAGTGAGGTTAGTGATGGTTCTCTGTATTTGGTGTGTGAGAGGCATTGTGGTAGGCTTTTGGACAAGTTTGGTGGATTGTGGAATGGGGATGGTTTTGAATTGGATAAAGGCGGGGTTTGTAGTTTTGCAATGATGGCTAAGGGTGTCGTTGAAGCGGTGATTGCTTTGAATTTGGAAGGTTTGGTTGCTGGATGTTTGGGACTTTCGTGTTTTTCTTTTGATGAGCTTGGTGGCATTTGTATTGATTTGAATGAGGTGTTGTTGATGGGAAGGAAGATTTGGGATGAGGTTTCTGGTGGTGCGGGTGATGAACATGAAGCAATGTGTTTAGTTTGTTTGGACAATGAGATTTTTGTTAGCGTGGAGGTTTCGTCCAAGTTATTGAACAAGGGGGTTATTAGTCCAGAGAGTGGGGATTCACGATATCCAGTTGGGTATGGCTCAGATGTGTGGCCATTGGCTTGTGTGTTGCTGCGGCTTCTTGTTGGAAATGCTTTCCCTCGGATTACCTTGGAAGTGAGTGAAGAGAATGGCCTTGACGTTTCGGCTAGTTACACTTCTTGGGTGGAGAAAGTTAGTTCTGTTGTGGAAGAAAAATTTGGGTCTGAGTATCTGTCACTTAAGCAGACTCTCTGCAAATGTTTAGACATCAATCCGGGAAGTCGTCCAAATGTGGTGGATGTAAGGAAATGCATTCAGGATGTGCTAGTCAAACATCAATTTGGTATTTTGGGAAATACAGAGATTACAGTAAATAGGAACAACATAGACCACCCTATGATTCTTGCCATGTTGTTCCAGTTGGTTGAGGAAAGTTCTAAGGAGCTGAGAGAACATGAGGTGAAAGAAAATGGTAGTCAACCTGATTTTCTTCAAGGTGCGGAAAACAAACCCGATGAAGACCTTGTTGCTAGCTTATCTAATGGAATGACTGAGCTTAAAGATCTGCAAGGCCATCTTGGTTGTATCACTGGATTAGCTGTAGGAGGGGGGTATCTGTTTAGCTCCTCTTTTGATAAAACTGTTCGTGTATGGTCCTTGCAGGACTTTTCTCATTTGCACACATTTAGAGGTCATGAGAATAAAGTCATGGCTCTAGTTTATGTTGATGACGAAGAACCATTATGTATAAGTGGTGATGGTGGTGGGGGAATATTTGTCTGGGGGATTACTGTACCTCTTAGGCAAGATCCCTTGAGGAAATGGTACGAGCAGAAGGATTGGCGTTTTAGTGGTATCCATTCCTTGACTGCTTTCGGAAATCTTCTCTACACTGGAAGTGGAGATCGAACAATAAAAGCTTGGTCATTAAAGGATGGAACTTTGATGTGCGCAATGAATGGCCACCAATCTGTAGTTTCCACACTTTCAGTATGTGATGGTATTCTTTACAGTGGTAGTTGGGATGGAACCATCCGATTGTGGAGTCTTAATGATCACAGCCCGTTGGCGATACTAGGGGAAAATTTGCCTGGAGAGATGAAGTCTATCCTGGCTATTACTGCTAATAGGGATTTTCTGGTTGCAGCATATGAGAATGGATGCATAAAGGTCTGGAGAAATGACGTGTTCATGAATTCCAAAACATTGCATAGTGGTGCCATTTTTGCTATGAGTATGCATGGAAAATGGCTTTATACAGGAGGTTGGGACAAAAATGTTAATATACAGGAATTATCGGGAGATGAGTTTGAACTGAATGTCAACGCATTTGGATCCATTCCTTCCAGTTCTGTTGTGACAGCTATATTATGCAGCCAAGAAAAACTTTATGTTGGATATGGTGACAAGTCTATCAAGGAAAATCTTGGTCGCATTCATAAGACTTTCACTGACTTCACTAGCTTGAACCACTGGGTAGTTAATGACTATTTCCGATTAGTGAACTCTGTCAATGCCTTTGAGCGTCGGATTCAGGCACTATCCGATGACCAGTTGGCTGCCAAAACTGAGGAGTTTCGTCTCCGGCTCAAGCGTGGGGAGACGCTTGCGGATATCCAAGCTGAGGCGTTCGCTGTTGTTCGTGAGGCTGCGAGAAGAAAACTTGGAATGCGCCATTTTGATGTTCAGATTATTGGTGGAGCTGTGCTGCATGATGGGTCCATTGCCGAGATGAAAACTGGAGAGGGGAAAACCTTAGTCTCCACCCTGGCAGCATATCTTAATGCTCTGACCGCTGAGGGTGTCCATGTTGTAACTGTGAATGATTATTTAGCTAAACGTGATGCTGAATGGATGGGGCGTGTTCATCGTTTCTTAGGTCTTTCTGTTGGTCTTATTCAGAAGGGGATGAAATCCGAAGAACGGAGATTCAACTATAGATGTGATATAACATATACCAATAATTCGGAGCTTGGCTTTGATTACTTGAGAGATAATCTTGCTGGAAATAGCGAACAGCTTGTTATGAGATGGCCAAAGCCATTTCATTTTGCTATTGTTGATGAGGTGGATTCAGTCTTGATTGACGAGGGAAGAAATCCGTTGTTGATCAGTGGTGAGGCCAGTCAAGAGGCTGCACGGTACCCTGTTGCTGCAAAAGTGGCCGAATTGCTTACACAGGGCATTCATTACACCGTGGAACTCAAAAATAATTCGGTGGAGTTGACCGAGGAAGGAATTACTCTTGCTGAAATGGCTCTAGAAACAAATGATCTTTGGGATGAAAATGATCCCTGGGCTAGATTTGTGATGAATGCTTTAAAAGCTAAAGAATTCTATCGCCGAGATGTGCAATACATTGTCAGAGATGGAAAGGCTTTAATTATAAATGAGCTGACAGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCTGTTGTCGTGGCACAAATTACGTACCAATCATTATTCAAGCTTTATCCAAAATTGTCAGGAATGACTGGAACTGCAAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTCCAGACGCCAGTAATTGAAGTGCCCACAAATCTTCCTAATATTCGCAAAGACTTGCCTGTTCAAGCATTTGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAAGATATGTTTAGACAAGGGCGTCCGGTCTTGGTTGGGACAACTAGTGTAGAGAATTCTGAACTTTTAGCTGGTCTGCTTAGGGAGTGGAATATTCCCCATAATGTTCTGAATGCTCGACCCAAGTATGCTGCGAGAGAAGCTGAAATTGTTGCACAGGCAGGACGGAAACATGCCATTACAATATCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTGGAGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGATAGCGTGGTTCCTTTTTTGACACAGGAGGATCCAAATAGTGAACTTGCCGGTGAGGCCATTTCAGAAAAGATGCTTCCAAAGATAAAGGTGGGATCATCATCATTAGCCTTACTGGCTAAGACAGCCTTAATGGCAAAATATGTATCGAAAAGTGAGGGTAAAAGTTGGACATATCAGAAGACTATATCTTTTATCTTGGGGTCTGTTGAATTGAGTCTTTCGTATAGTTTGAAAGAGCTGGAGGAGCTTGCCAATGAAGAATCTGAGTTCTACCCACTTGGTCCAACGGTAGCACTTGCTTATCTGGCAGTTTTAAAGGATTGTGAAGAACACTGTTTGTGTGAAGGGTCTGAGGTAAAAAGGCTGGGGGGTCTTCATGTGATTGGTACATCTCTACACGAGTCCCGAAGAATAGACAATCAGCTTCGCGGCAGAGCTGGAAGGCAGGGTGATCCAGGGTCAACAAGGTTTATGGTCAGCTTGCAGGATGAGATGTTTCAAAAGTTCAATTTTGACACTCAATGGGCTGTTAGAATTATATCAAAGATTACAAACGGAGAGGATCTGCCAATTGAAGGTGGTGCCATTGTGAAACAGCTCTTGGCATTGCAAATCAATGCAGAAAAGTTCTTCTTTGGCATAAGAAAGAACCTCGTTGAGTTTGATGAAGTATTGGAGGTGCAACGAAAACATGTTTATGATCTAAGGCAGTTAATCTTAACAGGAGATGACGAAAGCTGTTCCCAACATATATTGCAGTACATGCAAGCAGTGGTGGATGAGATTGTCTTTAGTAACATTGATCCATTGAAGCATCCTCGTAGTTGGAGTTTGAGTAACCTCTTGAAAGAGTTCAAGACAATTGGTGGAAAGCTGTTGCATGAATCATTAGGAGGGATTAATGATGACGCTTTACTAAATTCACTAGGGCAACTGAATGAAGTGAATTCAGTTGATGTTGTCAACTTTTGCCTTCCAAATTTGCCAGCACCTCCAAATGCTTTCAGGGGTATTCGCAGGAAGAGCTCTTCATTAAAACGATGGCTTGCAATTTGCACCGATGATTTAATTGAGAACGGGAAGTATCGGACGACTTCTAATCTCCTTCGCAAGTATCTTGGAGATTTTCTAATTGCTTCGTATTTAGATGTTGTTGAAGAGTCTGGTTATGATGAGAGACATGTAAAAGAGATTGAGAGAGCTGTTCTTTTGAAAAGTCTTGACTGTTTCTGGAGAGATCATCTTGTAAACATGAATAGGCTTAGCTCTGCGGTGAATGTTAGGAGCTTCGGCCATAGAAATCCTCTGGAAGAATACAAAATTGATGGCTGTCGGTTTTTCATCTCAATGCTCAGTGCAACTCGAAGGTTAACTGTAGAAGCACTTTTACGACATTGGACATCTCCAATGGAATCCCAAGAATTATTGTTATAA 5415 0.4273 MEELPECPVCLQSYDDGTAIPRVLSCGHTVCEVCLVELHQRFPNTIRCPACTQLVKYSPKQGPSSLPKNIDLLRLCLQQQDSSDENQLRKLNQQSSINDEYSARFWSDEFYVAWKDWILPHDAVSVGEDGFGLFSSSSKGRVCFGVNHTVSLVPVVTLHTVSDLKFKFSYVAWVIKCLEGLTEAARDALCLILEASVRQSRICRVYGLWSEVSDGSLYLVCERHCGRLLDKFGGLWNGDGFELDKGGVCSFAMMAKGVVEAVIALNLEGLVAGCLGLSCFSFDELGGICIDLNEVLLMGRKIWDEVSGGAGDEHEAMCLVCLDNEIFVSVEVSSKLLNKGVISPESGDSRYPVGYGSDVWPLACVLLRLLVGNAFPRITLEVSEENGLDVSASYTSWVEKVSSVVEEKFGSEYLSLKQTLCKCLDINPGSRPNVVDVRKCIQDVLVKHQFGILGNTEITVNRNNIDHPMILAMLFQLVEESSKELREHEVKENGSQPDFLQGAENKPDEDLVASLSNGMTELKDLQGHLGCITGLAVGGGYLFSSSFDKTVRVWSLQDFSHLHTFRGHENKVMALVYVDDEEPLCISGDGGGGIFVWGITVPLRQDPLRKWYEQKDWRFSGIHSLTAFGNLLYTGSGDRTIKAWSLKDGTLMCAMNGHQSVVSTLSVCDGILYSGSWDGTIRLWSLNDHSPLAILGENLPGEMKSILAITANRDFLVAAYENGCIKVWRNDVFMNSKTLHSGAIFAMSMHGKWLYTGGWDKNVNIQELSGDEFELNVNAFGSIPSSSVVTAILCSQEKLYVGYGDKSIKENLGRIHKTFTDFTSLNHWVVNDYFRLVNSVNAFERRIQALSDDQLAAKTEEFRLRLKRGETLADIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTAEGVHVVTVNDYLAKRDAEWMGRVHRFLGLSVGLIQKGMKSEERRFNYRCDITYTNNSELGFDYLRDNLAGNSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASQEAARYPVAAKVAELLTQGIHYTVELKNNSVELTEEGITLAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQTPVIEVPTNLPNIRKDLPVQAFATARGKWEQVRREVEDMFRQGRPVLVGTTSVENSELLAGLLREWNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLAREIIEDSVVPFLTQEDPNSELAGEAISEKMLPKIKVGSSSLALLAKTALMAKYVSKSEGKSWTYQKTISFILGSVELSLSYSLKELEELANEESEFYPLGPTVALAYLAVLKDCEEHCLCEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTQWAVRIISKITNGEDLPIEGGAIVKQLLALQINAEKFFFGIRKNLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHILQYMQAVVDEIVFSNIDPLKHPRSWSLSNLLKEFKTIGGKLLHESLGGINDDALLNSLGQLNEVNSVDVVNFCLPNLPAPPNAFRGIRRKSSSLKRWLAICTDDLIENGKYRTTSNLLRKYLGDFLIASYLDVVEESGYDERHVKEIERAVLLKSLDCFWRDHLVNMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVEALLRHWTSPMESQELLL* 1805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5012 1804 Hamap Protein translocase subunit SecA [secA]. 814 1795 IPR000185 GO:0005524|GO:0006605|GO:0006886
Tpr2g5012 1804 ProSiteProfiles Zinc finger RING-type profile. 7 52 IPR001841 -
Tpr2g5012 1804 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 901 1064 IPR014001 -
Tpr2g5012 1804 CDD DEXDc_SecA 854 1210 - -
Tpr2g5012 1804 Pfam SecA Wing and Scaffold domain 1517 1791 IPR011116 GO:0016020|GO:0017038
Tpr2g5012 1804 PRINTS G protein beta WD-40 repeat signature 542 556 IPR020472 -
Tpr2g5012 1804 PRINTS G protein beta WD-40 repeat signature 632 646 IPR020472 -
Tpr2g5012 1804 PRINTS G protein beta WD-40 repeat signature 672 686 IPR020472 -
Tpr2g5012 1804 Pfam SecA preprotein cross-linking domain 1050 1154 IPR011130 GO:0016020|GO:0017038
Tpr2g5012 1804 Gene3D - 1046 1166 - -
Tpr2g5012 1804 ProSiteProfiles Trp-Asp (WD) repeats profile. 525 564 IPR001680 GO:0005515
Tpr2g5012 1804 SMART SecA_DEAD_2 819 1198 IPR011115 GO:0005524|GO:0016020|GO:0017038
Tpr2g5012 1804 Gene3D Helical scaffold and wing domains of SecA 1522 1633 - -
Tpr2g5012 1804 Gene3D Transferase(Phosphotransferase) domain 1 323 448 - -
Tpr2g5012 1804 TIGRFAM secA: preprotein translocase, SecA subunit 840 1614 IPR000185 GO:0005524|GO:0006605|GO:0006886
Tpr2g5012 1804 SUPERFAMILY RING/U-box 4 59 - -
Tpr2g5012 1804 Gene3D - 1213 1519 IPR027417 -
Tpr2g5012 1804 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 809 1802 IPR000185 GO:0005524|GO:0006605|GO:0006886
Tpr2g5012 1804 ProSiteProfiles SecA family profile. 815 1519 IPR014018 -
Tpr2g5012 1804 SUPERFAMILY Protein kinase-like (PK-like) 198 449 IPR011009 -
Tpr2g5012 1804 Gene3D - 607 838 IPR015943 GO:0005515
Tpr2g5012 1804 ProSiteProfiles Trp-Asp (WD) repeats profile. 655 694 IPR001680 GO:0005515
Tpr2g5012 1804 SMART ring_2 7 51 IPR001841 -
Tpr2g5012 1804 CDD RING-HC_TRIM32_C-VII 6 52 - -
Tpr2g5012 1804 SUPERFAMILY Helical scaffold and wing domains of SecA 1523 1802 IPR036266 -
Tpr2g5012 1804 ProSiteProfiles Trp-Asp (WD) repeats profile. 629 654 IPR001680 GO:0005515
Tpr2g5012 1804 Gene3D Helical scaffold and wing domains of SecA 1660 1792 - -
Tpr2g5012 1804 SMART WD40_4 730 767 IPR001680 GO:0005515
Tpr2g5012 1804 SMART WD40_4 518 555 IPR001680 GO:0005515
Tpr2g5012 1804 SMART WD40_4 604 645 IPR001680 GO:0005515
Tpr2g5012 1804 SMART WD40_4 648 685 IPR001680 GO:0005515
Tpr2g5012 1804 SMART WD40_4 558 598 IPR001680 GO:0005515
Tpr2g5012 1804 SMART WD40_4 688 729 IPR001680 GO:0005515
Tpr2g5012 1804 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 655 687 - -
Tpr2g5012 1804 SUPERFAMILY WD40 repeat-like 507 801 IPR036322 GO:0005515
Tpr2g5012 1804 Gene3D - 506 606 IPR015943 GO:0005515
Tpr2g5012 1804 ProSitePatterns Zinc finger RING-type signature. 26 35 IPR017907 -
Tpr2g5012 1804 Pfam SecA DEAD-like domain 825 1197 IPR011115 GO:0005524|GO:0016020|GO:0017038
Tpr2g5012 1804 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 809 1802 - -
Tpr2g5012 1804 SMART SecA_PP_bind_2 1043 1154 IPR011130 GO:0016020|GO:0017038
Tpr2g5012 1804 Pfam RING-type zinc-finger 7 49 IPR027370 -
Tpr2g5012 1804 ProSitePatterns SecA family signature. 1298 1313 IPR020937 GO:0006605|GO:0006886|GO:0016020
Tpr2g5012 1804 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Tpr2g5012 1804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1213 1501 IPR027417 -
Tpr2g5012 1804 Gene3D - 839 1211 IPR027417 -
Tpr2g5012 1804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 822 1211 IPR027417 -
Tpr2g5012 1804 CDD SF2_C_secA 1216 1487 IPR044722 -
Tpr2g5012 1804 Pfam WD domain, G-beta repeat 522 555 IPR001680 GO:0005515
Tpr2g5012 1804 Pfam WD domain, G-beta repeat 656 685 IPR001680 GO:0005515
Tpr2g5012 1804 SUPERFAMILY Pre-protein crosslinking domain of SecA 1042 1163 IPR036670 GO:0016020|GO:0017038
Tpr2g5012 1804 PRINTS SecA protein signature 875 899 IPR000185 GO:0005524|GO:0006605|GO:0006886
Tpr2g5012 1804 PRINTS SecA protein signature 913 927 IPR000185 GO:0005524|GO:0006605|GO:0006886
Tpr2g5012 1804 PRINTS SecA protein signature 929 939 IPR000185 GO:0005524|GO:0006605|GO:0006886
Tpr2g5012 1804 PRINTS SecA protein signature 982 1002 IPR000185 GO:0005524|GO:0006605|GO:0006886
Tpr2g5012 1804 PRINTS SecA protein signature 1135 1157 IPR000185 GO:0005524|GO:0006605|GO:0006886
Tpr2g5012 1804 PRINTS SecA protein signature 1172 1189 IPR000185 GO:0005524|GO:0006605|GO:0006886
Tpr2g5012 1804 PRINTS SecA protein signature 1209 1222 IPR000185 GO:0005524|GO:0006605|GO:0006886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5012 Tpr-Chr2 55900359 55936940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5012 520 757 Acyl Lipid Metabolism Gene Families AT3G18860 27.668 7.83e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5012 K03070 - gmx:100793437 2881.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5012 2 55900359 55936940 Tpr2g5012 2 55900359 55936940 ECH