Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4996 ATGCCAGCTTCTCCTTCAGATAATCGAACCAAATGGAGGAAACGGAAAAGAGAATCACAAATCACCAAACGTCAACAGAAACATCAAGAGGAAGAAGAAGAAGAAGACGAAGAAAATCCCAATGCCGATGAAGAAAACGAACGCGACTACGATTCAGAGGACCAACACAACCATAACCACTCTAATTCTCAACCGCAACATGAAATCGAGATTCTATCTGATCACGGTATTCAGATTTCGCACTTTCCCATGGTTATTAAGCGTGCTGTTAATCGTCCTCATTCTTCTGTAACTTCAATTGTTGCTCTTGAACGAGCTATGGAGTTGGGAGATACCAAAGCTCAGCTTCAGAATCAGAATCCTCCGTTTCTGGAGAATATTTCTCATGGACAGCTTCAAGCGTTATCGTTTGTTCCTTCTGATAGTCTCTCTTTGGATCAGGATCGTGCTGATTCCTCTTATGTTATCACTCCACCACCTATTTTGGAAGGCCGCGGCGTTGTTAAGCGATTTGGAAGTAGGGTTCTTGTGCTTCCAATGCATTCAGATTGGTTTTCACCTGGAACTGTGCATCGGTTAGAGAGACAAGCAGTGCCACATTTCTTTTCAGGGAAAACAAAGGATCTTAGTCCTGAAAAGTACATGGAATGTAGGAACTATATTGTTGCATTATATATGGAGGAGCCGCGGAAAAGGATTACTGCTTCTGATTGCCAGGGATTGCAGGTTGGTGTTGATCATGAAGATTTGTCTCGAATTGTACGGTTTCTTGACCACTGGGGCATTATCAATTACTGTGCCCGGGTGCCAAGTCATGAGCCTCCAAATGCTGTGTCATGCTTGAAGGAGGATACTGGTGGAGAGCTTCATGTGCCATCAGAGGCCTTGAAGTCTATAGATAGTTTGATCAAATTTGATAAGCCTAACTGTAAGCTCAAAGCAGAAGAAGTTTATTCACCACCGACAACAAATAGCTCGGATGTCCCTGATCTGGATGGCAGAATAAGAGAGCATCTGTCTGATAATCATTGCAATTATTGTTCTTGTCCTCTTCCTGCTGTATACTATCAGTCTCAAAAGGAGGTGGATATTTTACTTTGCACTGATTGCTTTCATGATGGGAAATTTGTCGTTGGTCATTCAAGTATAGATTTTATAAGGGTGGACTCAACAAGGGATTATGGTGAATTAGATGGGGAAAGTTGGACTGATCAAGAGACCTTGTTACTGCTTGAAGCAGTGGAGATTTACCATGAGAATTGGAATGAAATAGCTGACCATGTTGGTACCAAGTCAAAAGCACAATGCATTCTTCATTTTCTTCGTCTACCCATGGAAGACGGGAAATTGGAAAATATCAATGTTCCAAGCATGTCCTCCGTGTCATCCAATGTGATGAGTAGAGATGATAATGGAAGATCACATCATTACTCAAACGGAGATTCTGCAGGACCTGTCCATCAAATCAGAGATTCTGACAGCCGCCTGCCTTTTGCTAACTCTGGAAATCCAGTTATGGCTCTGGTTGCCTTTTTAGCATCTGCGGTTGGACCAAGAGTAGCAGCTTCTTGTGCTCACGCAGCATTATCAGTACTGTCAGAGGATAACACTGGCTCCCAGACGGAAGCATCAGGACATGATAATAGGACAAATCCAGAAAACATACATTGTAGAGATGGTGGCTCTCGTGGAGAAACTGCAATTTCAAATAATCATAATGAGGATAAGGCAAAAGCACCTTGTTCGCGGGATCAAAGTGAGGGTAGGACAACCCCACTTTCTACTGAAAAAGTTAAAGATGCAGCTAAAGCAGGTCTCTCTGCTGCAGCTATGAAAGCTAAATTATTTGCTGATCACGAAGAACGAGAAATTCAGAGATTGTGTGCTAATATAATTAATCATCAGTTGAAAAGATTGGAATTGAAGCTGAAACAGTTTGCAGAAATTGAAACATTGTTGATGAAGGAATGCGAGCAAGTGGAAAGAGCAAAACAGAGGTTTGCTGCTGAGCGTACCCGCGTTATATCAGCACGTTTTGGAGCTGCAGGAACCATGCCCGCAATGAATGCATCAGGCGTTGGTCCTTCAATGTCTAGTAATGGCAATAATAGGCCACAAATGATCTCTGCTTCTCCCTCACAGCCCAGCATCTCAGGGTTTGGCAACAACCAACAAGTTCATCCACACATGTCCTTTGCCCCAAGACCTTCAATGTTTGGGTTGGGTCAAAGGTTACCCCTATCTATGATACAACAATCACAATCAGGTTCTTCAGCTCCCATGTTCAATGCCCCTAGTAATGTGCAACCCGGTACCAGTCATCCATTGTTGAGGCCCGTGTCTGGAACTAATTCTGGTTTAGGATAA 2367 0.4301 MPASPSDNRTKWRKRKRESQITKRQQKHQEEEEEEDEENPNADEENERDYDSEDQHNHNHSNSQPQHEIEILSDHGIQISHFPMVIKRAVNRPHSSVTSIVALERAMELGDTKAQLQNQNPPFLENISHGQLQALSFVPSDSLSLDQDRADSSYVITPPPILEGRGVVKRFGSRVLVLPMHSDWFSPGTVHRLERQAVPHFFSGKTKDLSPEKYMECRNYIVALYMEEPRKRITASDCQGLQVGVDHEDLSRIVRFLDHWGIINYCARVPSHEPPNAVSCLKEDTGGELHVPSEALKSIDSLIKFDKPNCKLKAEEVYSPPTTNSSDVPDLDGRIREHLSDNHCNYCSCPLPAVYYQSQKEVDILLCTDCFHDGKFVVGHSSIDFIRVDSTRDYGELDGESWTDQETLLLLEAVEIYHENWNEIADHVGTKSKAQCILHFLRLPMEDGKLENINVPSMSSVSSNVMSRDDNGRSHHYSNGDSAGPVHQIRDSDSRLPFANSGNPVMALVAFLASAVGPRVAASCAHAALSVLSEDNTGSQTEASGHDNRTNPENIHCRDGGSRGETAISNNHNEDKAKAPCSRDQSEGRTTPLSTEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIINHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFAAERTRVISARFGAAGTMPAMNASGVGPSMSSNGNNRPQMISASPSQPSISGFGNNQQVHPHMSFAPRPSMFGLGQRLPLSMIQQSQSGSSAPMFNAPSNVQPGTSHPLLRPVSGTNSGLG* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4996 788 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 59 787 - -
Tpr2g4996 788 CDD SANT 401 443 IPR001005 -
Tpr2g4996 788 Pfam SWIRM-associated region 1 604 681 IPR032451 -
Tpr2g4996 788 ProSiteProfiles Myb-like domain profile. 401 444 IPR001005 -
Tpr2g4996 788 MobiDBLite consensus disorder prediction 459 486 - -
Tpr2g4996 788 MobiDBLite consensus disorder prediction 534 548 - -
Tpr2g4996 788 ProSiteProfiles SWIRM domain profile. 176 274 IPR007526 GO:0005515
Tpr2g4996 788 MobiDBLite consensus disorder prediction 569 583 - -
Tpr2g4996 788 Gene3D - 398 448 - -
Tpr2g4996 788 ProSiteProfiles Zinc finger ZZ-type profile. 339 393 IPR000433 GO:0008270
Tpr2g4996 788 ProSiteProfiles SANT domain profile. 397 448 IPR017884 -
Tpr2g4996 788 MobiDBLite consensus disorder prediction 534 598 - -
Tpr2g4996 788 MobiDBLite consensus disorder prediction 31 50 - -
Tpr2g4996 788 Pfam SWIRM domain 179 265 IPR007526 GO:0005515
Tpr2g4996 788 PANTHER SWI/SNF COMPLEX-RELATED 59 787 - -
Tpr2g4996 788 SMART sant 398 446 IPR001005 -
Tpr2g4996 788 Gene3D - 182 269 IPR036388 -
Tpr2g4996 788 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 401 449 IPR017930 -
Tpr2g4996 788 SUPERFAMILY Homeodomain-like 175 268 IPR009057 -
Tpr2g4996 788 SUPERFAMILY Homeodomain-like 399 452 IPR009057 -
Tpr2g4996 788 Pfam Myb-like DNA-binding domain 401 443 IPR001005 -
Tpr2g4996 788 MobiDBLite consensus disorder prediction 768 788 - -
Tpr2g4996 788 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4996 Tpr-Chr2 55745239 55753105 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4996 344 440 EF-hand Containing Proteins AT3G07740 34.906 1.17e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4996 K11649 - gmx:100780440 1235.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4996 2 55745239 55753105 Tpr2g4996 2 55745239 55753105 ECH