Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4962 ATGGAAAACAACGCCGATGACAGAGAAGATTCAAAGCCAGTAGTTCTAATCACAGGTTGTACAGGTGGAGGAATTGGTCACGCGCTTGCACGCTCCTTCGCAGCCAACAGTTGCAAGGTTGTTGCCACCAGCAGGTCACTTTCCAGCATGCCGGACTTAGACAACGATCCCAAATTCTTCCTTCAAGAACTCGATGTTCAATCCGATGAAAGTGTTAACAGAGTTGTTGATACTGTTTTGAATAAATTTGGTCGTATCGATGTTCTTGTTAATAACGCTGGTGTTCCTTGTGTGGGCCCACTCGCTGAGATTCCTCTCTCTCAGATTCAAAGCACCTTTGAAACTAATGTCTTTGGTTCCATGAGAATGGTTCAGGCTGTGGTTCCTCACATGGCAACTAGGAAGCAGGGAAAGATTGTCAACGTTGGCAGTGTCACCGGTTTGGCATCTGGACCTTGGACGGGTGCTTACAGTGCTTCTAAAGCTGCTCTTCATGCTTTGACAGATACATTAAGATTGGAACTTGGACATTTTGGAATTGATGTTGTGAATGTTGTCCCTGGAGCTGTGAAGTCAAATATCGGAAATTCTGGCATAGCGATCTACAATCGCATGCCAGAGTGGAAACTCTTCAAGCCATTCGAAGCAGCAATCCGAGAGAGAGCTCTATTATCTCAGAGGTCAAGATCTACACCTACAGATGAGTTTGCTAAACACACTGTAGCTGCTGTCCTTAGGAAGAAACCACCTGCATGGTTCTCCTATGGCCATTACTCGACTGTCATGGCTATTGTGTATCATTTACCACTTTGTGTTAGAGACTTTCTTTTTAAGAAAGCAATGAAATGCTGA 852 0.446 MENNADDREDSKPVVLITGCTGGGIGHALARSFAANSCKVVATSRSLSSMPDLDNDPKFFLQELDVQSDESVNRVVDTVLNKFGRIDVLVNNAGVPCVGPLAEIPLSQIQSTFETNVFGSMRMVQAVVPHMATRKQGKIVNVGSVTGLASGPWTGAYSASKAALHALTDTLRLELGHFGIDVVNVVPGAVKSNIGNSGIAIYNRMPEWKLFKPFEAAIRERALLSQRSRSTPTDEFAKHTVAAVLRKKPPAWFSYGHYSTVMAIVYHLPLCVRDFLFKKAMKC* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4962 283 Gene3D - 12 267 - -
Tpr2g4962 283 Pfam short chain dehydrogenase 14 195 IPR002347 -
Tpr2g4962 283 CDD 17beta-HSD-like_SDR_c 27 259 - -
Tpr2g4962 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Tpr2g4962 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 IPR002347 -
Tpr2g4962 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 IPR002347 -
Tpr2g4962 283 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 12 267 IPR036291 -
Tpr2g4962 283 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 10 281 - -
Tpr2g4962 283 PANTHER BNAANNG04690D PROTEIN 10 281 - -
Tpr2g4962 283 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 188 - -
Tpr2g4962 283 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 144 172 IPR020904 GO:0016491
Tpr2g4962 283 PRINTS Glucose/ribitol dehydrogenase family signature 15 32 IPR002347 -
Tpr2g4962 283 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Tpr2g4962 283 PRINTS Glucose/ribitol dehydrogenase family signature 131 147 IPR002347 -
Tpr2g4962 283 PRINTS Glucose/ribitol dehydrogenase family signature 157 176 IPR002347 -
Tpr2g4962 283 PRINTS Glucose/ribitol dehydrogenase family signature 178 195 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4962 Tpr-Chr2 55377983 55380772 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4962 9 194 Acyl Lipid Metabolism Gene Families AT1G62610 31.658 1.10e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4962 - - mtr:MTR_3g087850 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4962 2 55377983 55380772 Tpr2g4962 2 55377983 55380772 ECH