Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4954 ATGGAATCGGAATCTCCGAGATCCGAAACACAAACGGATCCTCTCCAAAACCCCTTAGACGAACTCTGTCACGATCTTCACTCTCTCCAAGAGCTAGCTAACCGCGGCGCGTGGCGTTCAATCATCGACAAAGTCGCACGCGCTAGAGCACTCGCTCTTCTCCAAAAACCTCACGATCATCTCACATACCTCGCATTCAACGCACTCGCATTCACAAAACTACGTCGTTTCAATGAAGCTTCTTCTGAACTTGATTCCGTTGAAGATCTCGATAGTTCTCACTACAGGTATGAAACCTACCCTAAAATTTACCCTAATCGGGTCGGATCAATGGTTCCTTTTTCTCTTCGATGGCTTCATGCTTTAATTCCGATCAAATTAGGTCAACGCCAACAAGGAATTGATCGATTATACCGTCTTCTCGATTTCGTGCGTGAGAAGATTAAGGATAAAGAAAGCAATAATTTCAGTGTTTCGACTAATGTGTGGCGAAAAAGAGAGGTTTTTGTTGTGAATTGTATAATTGGTCACCATTTGAGTCATAAAGAGTTTGGTGTTTGTTTAAGTTTCATGAAAACCCTAATTTTGAACGATTCTTCGGATCCGTTTTTGATTTCGCAACTTGGGTATATTCAATTGCAAACTGGTGATTTGGAAGGGGCGAAAGCTTCATTTTTGAAAGCTGAAGTTGATGGGAAGAATAATGGGTCATTGAGTGAGGTTGAGTTTAAGAACCTTGTGAATAGAAACAAGGCTTTGGTGTATATGGTTGGGAAGGATTATGTATCTGCAGTTAGGGAGTATGAAGAATGCATTGAGAGGGACCATAGTGATATAGTGGCTTTTAATAATAAAGCTCTTTGTTTGATGTATTTGAGGGATTTGTCTGATTCAATCAAGGTGTTGGAAAATTCTCTTGAAAGGGTTCCTACTGTTGCTCTCAATGAAACCCTTGTTGTGAATTTGTGTAGTATGTATGAGTTGGCTTATGTTAATCATTCTGATATTAAGAGAACACTTAGTAATTGGATTGCTCGTGTTGCTCCTGATGATTTCGATGCAACTTGTACTCGTACATGA 1080 0.4019 MESESPRSETQTDPLQNPLDELCHDLHSLQELANRGAWRSIIDKVARARALALLQKPHDHLTYLAFNALAFTKLRRFNEASSELDSVEDLDSSHYRYETYPKIYPNRVGSMVPFSLRWLHALIPIKLGQRQQGIDRLYRLLDFVREKIKDKESNNFSVSTNVWRKREVFVVNCIIGHHLSHKEFGVCLSFMKTLILNDSSDPFLISQLGYIQLQTGDLEGAKASFLKAEVDGKNNGSLSEVEFKNLVNRNKALVYMVGKDYVSAVREYEECIERDHSDIVAFNNKALCLMYLRDLSDSIKVLENSLERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSNWIARVAPDDFDATCTRT* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4954 359 PANTHER F-BOX DOMAIN, TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN PROTEIN-RELATED 8 358 - -
Tpr2g4954 359 Gene3D Tetratricopeptide repeat domain 172 341 IPR011990 GO:0005515
Tpr2g4954 359 Coils Coil 134 154 - -
Tpr2g4954 359 PANTHER D-ALANYL-D-ALANINE CARBOXYPEPTIDASE 8 358 - -
Tpr2g4954 359 SUPERFAMILY TPR-like 199 314 IPR011990 GO:0005515
Tpr2g4954 359 SMART tpr_5 245 278 IPR019734 GO:0005515
Tpr2g4954 359 SMART tpr_5 202 234 IPR019734 GO:0005515
Tpr2g4954 359 SMART tpr_5 279 312 IPR019734 GO:0005515
Tpr2g4954 359 Pfam Tetratricopeptide repeat 207 228 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4954 Tpr-Chr2 55314201 55315558 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4954 K20309 - gmx:100779691 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4954 2 55314201 55315558 Tpr2g4954 2 55314201 55315558 ECH