Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4894 ATGTCGTCACGGTGGCGCTTCTTCCTTCTTTTCTTACTCTCGTTCACAGTTGCTTACGCAATGCCGGTTCCAACCACTTTTTCCGTAAGGCTGGTTCACCGGTTCTCCGAAGAAATGAAACCGGTTCGGGTTTCGACCAGTGACTGGCCGGACCGGCGGAGTATGCGATACTATCGGATGCTTCTTGAAAACGACTTTCTCAGACACAAGATCAATCTCGGTGCTGCTCGCCACCAGTTTTTGTTCCCTTCTCAAGGTAGCAAAACGATGTCGTTTGGTAACGACTTTGGATGGTTACATTATACATGGATTGATATAGGCACACCGAGTACTTCGTTTCTTGTAGCGTTGGATGCAGGGAGTGATCGTCTTTGGGTTCCCTGTGATTGCATACAGTGTGCTCCCTTGTCTGCGAGTTTCTATTCCAATTTGGATAGAGATTTGAATGAGTATAGTCCCTCTCGTTCGTTATCCAGCAAGCATTTATCTTGCAGCCATCGGTTATGTGATACGGGTTCAAATTGTAAAACTAACAAGCAGCAGTGTCCGTACACGGTCAATTATTTATCAGAGAATACATCAAGTTCTGGGTTGTTAGTTGAGGACATATTGCATCTTCAATCCAGCGATGGCAGCAGTGGCAGCAAATCTAATTCTTCTGTTCAGGCTCCAGTTGTTTTCGGGTGTGGTATGAAGCAAAGCGGTGGTTATTTAGATGGTGTTGCTCCGGATGGTCTCATTGGTTTGGGACCTGGGGAGAGTTCAGTTCCGAGTTTTCTTGCTAAATCAGGATTAATCCGTGATTCTTTTTCGTTGTGCTTTAATGAAGATGATTCTGGTAGATTATTTTTTGGTGACCAGGGACCAACCGTGCAACAGTCTACTCCATTCTTGCCATTGGATGGAATGTTTTCAACCTACATTATCGGAGTGGAGGCGTGTTGTATCGGGAGTTCTTGTCCTAAAGTAACAAGTTTTAATGCTCAGTTTGATAGTGGAACATCATTTACGCTTCTTCCTGGTCATGCATATGGAGCAATAGCTGAGGAGTTTGACAAACAAGTAAATGCTACAAGATCTACCTTTCAAGGATCTCCTTGGGAGTATTGTTATGAACCCAGTTCGCAACAGCTGCCTAAGATTCCTACATTGACACTCATGTTCCAACAGAATAACAGTTTTGTGGTCTATAATCCCGTGTTTGTATCTTACAACAATCAGGGAATCGATGGATTTTGTTTGGCAATACAGCCAGCCGATGGGGATCTGGGAATAATTGGGCAAAATTTCATGACGGGATACCGGTTGGTATTTGATAGGGAAAACAAGAAGCTAGCATGGTCACACTCAAATTGTCAGGATCTCAGTCTAGGTAAGAGGATGCCCATCTCTCCTTCAAATGGGTCATCGTCAAATCCGCTTCCTGCAGATGAGCAACAAAGAACCAAAGGTCATGCAGTTGCTCCAGCTGTTGCTGGAAGGGCTCCTCAAACACCTTCAGTTGTTTCATCTCAGATATCACAGATGGTTTCATACCGGCAACATTGGCACTACTATTGGTTGCTTCTATTTCAACTTCTGTCAGTATTTTACTAA 1596 0.4405 MSSRWRFFLLFLLSFTVAYAMPVPTTFSVRLVHRFSEEMKPVRVSTSDWPDRRSMRYYRMLLENDFLRHKINLGAARHQFLFPSQGSKTMSFGNDFGWLHYTWIDIGTPSTSFLVALDAGSDRLWVPCDCIQCAPLSASFYSNLDRDLNEYSPSRSLSSKHLSCSHRLCDTGSNCKTNKQQCPYTVNYLSENTSSSGLLVEDILHLQSSDGSSGSKSNSSVQAPVVFGCGMKQSGGYLDGVAPDGLIGLGPGESSVPSFLAKSGLIRDSFSLCFNEDDSGRLFFGDQGPTVQQSTPFLPLDGMFSTYIIGVEACCIGSSCPKVTSFNAQFDSGTSFTLLPGHAYGAIAEEFDKQVNATRSTFQGSPWEYCYEPSSQQLPKIPTLTLMFQQNNSFVVYNPVFVSYNNQGIDGFCLAIQPADGDLGIIGQNFMTGYRLVFDRENKKLAWSHSNCQDLSLGKRMPISPSNGSSSNPLPADEQQRTKGHAVAPAVAGRAPQTPSVVSSQISQMVSYRQHWHYYWLLLFQLLSVFY* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4894 531 Pfam Xylanase inhibitor C-terminal 327 448 IPR032799 -
Tpr2g4894 531 SUPERFAMILY Acid proteases 95 453 IPR021109 -
Tpr2g4894 531 Gene3D Acid Proteases 287 454 IPR021109 -
Tpr2g4894 531 MobiDBLite consensus disorder prediction 466 494 - -
Tpr2g4894 531 Pfam Xylanase inhibitor N-terminal 101 286 IPR032861 -
Tpr2g4894 531 Gene3D Acid Proteases 74 286 IPR021109 -
Tpr2g4894 531 PRINTS Pepsin (A1) aspartic protease family signature 106 126 IPR001461 GO:0004190|GO:0006508
Tpr2g4894 531 PRINTS Pepsin (A1) aspartic protease family signature 328 339 IPR001461 GO:0004190|GO:0006508
Tpr2g4894 531 PRINTS Pepsin (A1) aspartic protease family signature 424 439 IPR001461 GO:0004190|GO:0006508
Tpr2g4894 531 PANTHER ASPARTIC PROTEINASE-LIKE PROTEIN 1 7 469 - -
Tpr2g4894 531 ProSiteProfiles Peptidase family A1 domain profile. 100 448 IPR033121 -
Tpr2g4894 531 PANTHER ASPARTYL PROTEASES 7 469 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4894 Tpr-Chr2 54710784 54715552 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4894 93 455 Miscellaneous Gene Families AT1G44130 26.873 2.73e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4894 - - mtr:MTR_3g087780 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4894 2 54710784 54715552 Tpr2g4894 2 54710784 54715552 ECH