Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4872 ATGCCTTCCCTTCAGCTGTTGAACCTAACTCGGCATGGCCAGAGTTTTCTGGCTTCGAGGAGGAAAGCCATACTACTTACATCTGGTATCTTAATTGCTGGCGGAACAGCTGCATATATGCAATCAAGGTTTAGAGTTAATAAACATGATTTTGGCAATTGCAATGAGCAAAGCCATGATAAAGAAGTAACAAAGGAGGAGGTTATGAATGACTCCACTGCACCAAAAAATAAACAAAAGAAAGGGGGCTTGAAATCACTTAAAGTCCTTACTGCAATTCTTCTATCCGAGATGGGCCAATTAGGTGTGAAGAATCTTTTATCTTTAGTTGCCACAGTGGTGCTGCGAACTGCTTTAAGCAACAGGCTAGCTAAAGTGCAAGGCTTCCTATTTCGTGCTGCTTTTCTTCGGCGTGCACCATTGTTTTTTCGGTTAATTTCAGAAAATATTATTTTGTGCTTCCTCTTGTCAACCATTCATTCTACATCAAAGTATATAACAGGCACTCTGAGTCTACATTTCAGAAAAATATTGACAAAACTTATCCATTCCCACTATTTTGAGAACATGGTATATTACAAAATATCACACGTCGATGGTCGGATAACAAACCCAGAGCAAAGAATTGCTAGTGATGTACCAAAGTTCTGTTCAGAGTTGAGTGAAATTGTTCAAGATGATCTAACAGCAGTGACTGATGGACTTCTATATACTTGGCGGCTGTGTTCATATGCTAGCCCAAAATATGTCTTCTGGATATTGGCCTATGTGCTTGGAGCTGGGGCTGCAATCAGAAACTTCTCTCCTTCGTTTGGGAAACTTATGTCCAGAGAACAGCAACTGGAAGGAGAGTATCGACAGCTTCACTCACGATTAAGGACTCACTCAGAAAGTATAGCATTTTACGGTGGAGAGAGGAGAGAAGAATCTCATATTCAACAGAAATTTAAAACCTTGGTTGGGCACATGAGTAGAGTGCTACATGACCATTGGTGGTTTGGCATGATTCAGGACTTTTTGTTGAAATACCTTGGTGCAACTTTTGCTGTTATTTTGATTATTGAACCTTTCTTTTCTGGTCATCTAAGGCCGGATAGTTCAACTTTAGGGCGTGCCGAGATGTTAAGCAATCTAAGATATCACACAAGTGTCATAATTTCCTTATTTCAGTCTCTAGGAACTCTTTCTATCAGTGCAAGACGGCTCAATCGTCTTAGTGGGTATGCTGATCGCATTTACGAATTAATGGCTGTATCAAGGGAGCTAAGTTTGGTGGATGAGAAATCATCCCTGCAAAGAAATGGAAGTAGAAATTGCATAAGCGAAGCTAACTACATTGAATTTTCGAATGTCAAGGTTGTGACCCCCACTGGTAATGTCCTGGTGGATGATCTGACTCTCAGAGTTGAGCCAGGATCTAATCTTTTGATTACAGGTCCAAATGGAAGTGGAAAAAGCTCGCTTTTCCGGGTTTTAGGCGGTCTTTGGCCGTTGATATCTGGACATATTGTGAAACCTGGTATTGGCTCTGATCTTAATAAGGAGATTTTCTATGTGCCACAAAGACCATACACTGCTGTGGGAACACTTCGCGATCAGTTGATTTATCCTCTTACTGCCAGTCAAGAGGTTGAACCGCTCACAAAGCATGGGATGGTGGAGCTATTGAAAAATGTTGACCTTGAATACCTGTTGGACCGTTACCCGCCTGAAAAGGAAGTAAACTGGGGTGATGAACTTTCATTGGGTGAGCAACAGAGATTGGGCATGGCTAGACTTTTCTACCACAAACCTAAATTTGCAATTCTTGATGAGTGCACAAGTGCTGTCACTACTGACATGGAAGAACGATTTTGTGCTAAAGTTCGGGCCATGGGAACATCATGCATTACCATATCACATCGTCCAGCATTGGTTGCATTCCATGATGTGGTTTTATCCTTAGATGGTGAAGGAGGATGGAGTGTTCATTATAGAAGGGAGGACTCTTCTACTGAAATGGGGATTGATACAATGAAGGTGTCAGAAACAAAACGACAGAATGATGCAAAAGCAGTTCAACGAGCATTTGCCATGAATAAAAAGGACTCTGCATTCTCAAATTCAAAAGCAGAGTCGTATATTGCAGATGTGATACATTCATCCCCATCTACTAATCAGACTATTTTGCCATCTACTGTTCCCCAACTTCGTGGTAATACAAGGATATTGCCACTGAGAGTAGCCGCCATGTGCAAAGTATTGGTACCCACTGTATTCGATAAACAAGGCGCACAACTGCTTGCCGTTGCTCTTCTTGTTGTTTCAAGAACATGGGTCTCAGATCGTATTGCATCTCTAAATGGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGTTGCCTTTATTCGGTTAATTGGTATAAGTGTACTTCAAAGTGCCGCATCTTCTTTCATTGCACCTTCTATAAGACATTTGACAGCACGGCTGGCCCTTGGGTGGCGGATTCGTCTGACACAACATCTACTCAAGAACTATTTGAGAAGCAATGTGTTTTACAAGGTCTTCCACATGGCAAGCAAAAGTGTTGATGCAGATCAGAGGATAACTCAAGATTTGGAGAAGTTAACAACAGACTTGTCTGGACTGGTAACTGGACTGGTAAAGCCAACTGTAGATATTTTGTGGTTCACGTGGAGAATGAAGCTTTTAACTGGTCAAAGGGGAGTTGCCATCCTCTATGTTTACATGTTACTTGGCCTTGGGTTTTTAAGAGCTGTTACTCCTGATTTTGGTGATTTGATAAGCCAAGAACAACAACTTGAAGGAATTTTTAGGTTCATGCATGAAAGACTCTGTACTCATGCTGAATCTGTTGCTTTCTTCGGAGGCGGTGCTCGAGAAAAAGCGATGGTTGAATCAAGATTCAGCGACCTTCTCACACACTCCCAGTATCTTCTGAAAAAGAAGTGGCTGTTTGGTATACTAGACGATTTCATCACAAAACAACTACCTCATAATGTGACTTGGTTGTTGAGCTTGTTGTATGCTATGGAACACAAAGGAGACCGTGCAGCGATAAGTACCCAGGGTGAGCTGGCACATGCATTGAGGTTCTTAGCATCTGTCGTTTCTCAAAGCTTTTTAGCTTTCGGCGACATTCTTGAATTGAATAGGAAGCTTGTAGAGCTTTCTGGGGGTATTAATCGGATTTTTGAGCTTGAAGAGCTGCTGGATGCAGCACAGTCTGGGGAATTCATCAATGGCGGTGCTATGTCTGCAGTAACGGATTATCATTCTAAAGATGTTATTTCTTTTTCTAAGGTTAATATTGTCACCCCTACACAGAAGATGTTGGCCAGGGAATTGACATGTGATGTTGAGCTTGGGAGAAGCCTGCTTGTTACTGGTCCAAATGGAAGCGGGAAAAGTTCCATTTTCAGAGTTCTCCGAGGACTTTGGCCAATTGCAAGTGGAAGATTATCTAGACCATCTGAAGATGTGAATCTAGATGCTGGATCAGGTTGTGGCATCTTCTATGTTCCTCAACGGCCGTACACATGCCTGGGAACATTGAGGGACCAAATTATATACCCTCTATCCCGGGAGGAAGCAGAGTTAAGAGCATTGAAGGTTTATGGAAAAGGTGAAAAACATCCTGACACTGTAAAGTTGCTGGACAAGCACTTGGAAAGTATCCTGGAGAATGTTCGGTTGAATTATCTTCTAGAAAGGGACAACAAGGGCTGGGATGCAAATCTAAATTGGGAAGACACTCTCTCTCTTGGAGAACAGCAGAGATTAGGCATGGCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCTTGGACGAGTGTACCAATGCAACGAGTGTTGATGTGGAAGAACACCTATATGGGCTAGCGAAGGAAATGGATATCACATTTATTACTTCTTCACAACGTCCTGCTTTAATACCATTTCATTCCACTGAATTGCGGCTGATTGATGGTGAGGGTAATTGGCAACTCCGTTCGATCAAGCAATGA 4011 0.4206 MPSLQLLNLTRHGQSFLASRRKAILLTSGILIAGGTAAYMQSRFRVNKHDFGNCNEQSHDKEVTKEEVMNDSTAPKNKQKKGGLKSLKVLTAILLSEMGQLGVKNLLSLVATVVLRTALSNRLAKVQGFLFRAAFLRRAPLFFRLISENIILCFLLSTIHSTSKYITGTLSLHFRKILTKLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPKFCSELSEIVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGAAIRNFSPSFGKLMSREQQLEGEYRQLHSRLRTHSESIAFYGGERREESHIQQKFKTLVGHMSRVLHDHWWFGMIQDFLLKYLGATFAVILIIEPFFSGHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIYELMAVSRELSLVDEKSSLQRNGSRNCISEANYIEFSNVKVVTPTGNVLVDDLTLRVEPGSNLLITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTASQEVEPLTKHGMVELLKNVDLEYLLDRYPPEKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYRREDSSTEMGIDTMKVSETKRQNDAKAVQRAFAMNKKDSAFSNSKAESYIADVIHSSPSTNQTILPSTVPQLRGNTRILPLRVAAMCKVLVPTVFDKQGAQLLAVALLVVSRTWVSDRIASLNGTTVKFVLEQDKVAFIRLIGISVLQSAASSFIAPSIRHLTARLALGWRIRLTQHLLKNYLRSNVFYKVFHMASKSVDADQRITQDLEKLTTDLSGLVTGLVKPTVDILWFTWRMKLLTGQRGVAILYVYMLLGLGFLRAVTPDFGDLISQEQQLEGIFRFMHERLCTHAESVAFFGGGAREKAMVESRFSDLLTHSQYLLKKKWLFGILDDFITKQLPHNVTWLLSLLYAMEHKGDRAAISTQGELAHALRFLASVVSQSFLAFGDILELNRKLVELSGGINRIFELEELLDAAQSGEFINGGAMSAVTDYHSKDVISFSKVNIVTPTQKMLARELTCDVELGRSLLVTGPNGSGKSSIFRVLRGLWPIASGRLSRPSEDVNLDAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKVYGKGEKHPDTVKLLDKHLESILENVRLNYLLERDNKGWDANLNWEDTLSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEHLYGLAKEMDITFITSSQRPALIPFHSTELRLIDGEGNWQLRSIKQ* 1337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4872 1336 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 446 677 IPR003439 GO:0005524
Tpr2g4872 1336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1092 1324 IPR027417 -
Tpr2g4872 1336 ProSitePatterns ABC transporters family signature. 580 594 IPR017871 GO:0005524
Tpr2g4872 1336 SUPERFAMILY ABC transporter transmembrane region 760 1067 IPR036640 GO:0005524|GO:0016021
Tpr2g4872 1336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 443 650 IPR027417 -
Tpr2g4872 1336 MobiDBLite consensus disorder prediction 58 80 - -
Tpr2g4872 1336 Gene3D - 1090 1328 IPR027417 -
Tpr2g4872 1336 ProSitePatterns ABC transporters family signature. 1254 1268 IPR017871 GO:0005524
Tpr2g4872 1336 Gene3D - 433 709 IPR027417 -
Tpr2g4872 1336 CDD ABCD_peroxisomal_ALDP 1098 1329 - -
Tpr2g4872 1336 Pfam ABC transporter transmembrane region 2 745 1010 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g4872 1336 Pfam ABC transporter transmembrane region 2 90 358 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g4872 1336 MobiDBLite consensus disorder prediction 58 74 - -
Tpr2g4872 1336 Pfam ABC transporter 1116 1282 IPR003439 GO:0005524
Tpr2g4872 1336 Pfam ABC transporter 463 608 IPR003439 GO:0005524
Tpr2g4872 1336 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1092 1335 IPR003439 GO:0005524
Tpr2g4872 1336 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 76 596 - -
Tpr2g4872 1336 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 591 1336 - -
Tpr2g4872 1336 SUPERFAMILY ABC transporter transmembrane region 142 416 IPR036640 GO:0005524|GO:0016021
Tpr2g4872 1336 Gene3D ABC transporter type 1, transmembrane domain 97 417 IPR036640 GO:0005524|GO:0016021
Tpr2g4872 1336 SMART AAA_5 1123 1326 IPR003593 -
Tpr2g4872 1336 SMART AAA_5 471 650 IPR003593 -
Tpr2g4872 1336 CDD ABCD_peroxisomal_ALDP 446 654 - -
Tpr2g4872 1336 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 105 340 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g4872 1336 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 76 596 - -
Tpr2g4872 1336 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 591 1336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4872 Tpr-Chr2 54417061 54430370 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4872 1 1336 Acyl Lipid Metabolism Gene Families AT4G39850 77.852 0.0 2140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4872 K25819 - gmx:100813765 2362.41