Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4857 ATGGGTGCTTCTGGTTCCAAACTTGAAAAGGCTCTCGGTGACAATTTCCCTGAAGGAGAACATTACTTTGGCCTTGAGAATTTTGGCAATACTTGTTATTGCAACAGCGTTTTGCAGGCTCTATACTTCTGTGTTCCATTTCGAGAACAATTGCTACAGTATTATGGAAAAAACAAAAACACAACAGATGCAGAGGAAAATCTTTTGACTTGCTTAGCTGAACTATTTTCGCAGATAAGCTCCCAGAAGAGGAAAACAGGTGTAATTGCTCCCAAACGATTTGTACAGAGGTTGAAAAAACAGAATGAACTCTTCCGTAGCTATATGCACCAGGATGCCCACGAATTCTTGAACTATTTGTTAAACGAACTTGTTGACATTCTGGAGAAAGAGGCCCAGGTTGCAAAAGACGATCAAGAGACATTACTACCTTCTGAGAAGATTGCAAATGGACCAAAGAAGAATGGTTTAGCTAATGGTGCTAAAAAAGAGCCGCCTTTAGCTACTTGGGTGCACAAAAATTTTCAGGGAATACTTACCAATGAGACAAGGTGCTTGCAATGCGAAACAGTAACTGCTAGGGATGAAACATTTTTCGACTTGAGTCTTGATATTGAACAAAACAGTTCAATTACAAGCTGTTTGAAAAATTTCAGTTCGACTGAGACATTGAATGCCGAAGACAAATTTTTTTGTGACAAGTGCTGCAGCTTGCAAGAAGCTCAGAAGAGGATGAAGATAAAGAGACCGCCCCGTGTCTTAGTCATTCATCTTAAGCGATTTAAGTACATGGAACAGCTGGGCCGCTACAAGAAGCTGTCATACCGTGTGGTCTTTCCCCTTGAACTCAGATTGAGTGATACAGACGAAGAAGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTTGGGAGTGGACCCAACCACGGGCATTATGTTTGCCTTGTAAAAAACCATAACCACTGGTTATGTTTTGATGACGAAACTGTCGAGGCAGTTGATGAATCTTCTGTTCAGACATTCTTTGGGTCAACACAAGACTTCAACAATAATACAGACCATGGTTACATTTTGTTCTATGAGAGCATTAACAGAAACTAG 1107 0.4038 MGASGSKLEKALGDNFPEGEHYFGLENFGNTCYCNSVLQALYFCVPFREQLLQYYGKNKNTTDAEENLLTCLAELFSQISSQKRKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNYLLNELVDILEKEAQVAKDDQETLLPSEKIANGPKKNGLANGAKKEPPLATWVHKNFQGILTNETRCLQCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKRPPRVLVIHLKRFKYMEQLGRYKKLSYRVVFPLELRLSDTDEEADIEYSLFAVVVHVGSGPNHGHYVCLVKNHNHWLCFDDETVEAVDESSVQTFFGSTQDFNNNTDHGYILFYESINRN* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4857 368 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Tpr2g4857 368 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 296 314 IPR018200 GO:0004843|GO:0006511
Tpr2g4857 368 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 1 366 - -
Tpr2g4857 368 Pfam Ubiquitin carboxyl-terminal hydrolase 23 362 IPR001394 GO:0004843|GO:0016579
Tpr2g4857 368 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 366 - -
Tpr2g4857 368 CDD Peptidase_C19G 24 363 - -
Tpr2g4857 368 SUPERFAMILY Cysteine proteinases 21 364 IPR038765 -
Tpr2g4857 368 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 365 IPR028889 -
Tpr2g4857 368 Gene3D Cysteine proteinases 5 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4857 Tpr-Chr2 54275646 54286197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4857 24 336 Miscellaneous Gene Families AT4G31670 27.469 2.79e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4857 K11842 - gmx:100305765 668.692