Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4844 ATGGGGCGAGGCAGAGGAGGGAAGAGCCGCACACAGAGAAAGCATTTCCAGCAAAACAGAGAGAACGTTTGGAAGCCACCACGTCCAGAATCACTTCCTTCTCCCACAAATCTTTTTGATATTCAAAACGCTGATTTCGATCACTATTACAAGGACCAAAACATCGTGTCACCGGAAGAATGGGATTCATTCATGCAACTTCTAAGAACTCCGTTACCTGCAGCATTTAGAATCAATTCCAGTAGCCTTTTTCATGCCGATATTCGATCCCAGCTGGAAAATGACTTTGCACCCGATCTTCAGTCCATGGTTGATGAAGGGGATGAGGAGGATGCTATTAAGCCTTTGCCATGGTATCCGGACAATTTTGCTTGGCATTCTAATTTTTCCCGTATGCAGCTCAGGAAGAATCAAGCACTTAAGAGGTTTCATGAATTCTTAAAGCTAGAAAATGAAATTGGAAATATTACGAGACAGGAAGCTGTCAGCATGGTGCCTCCTCTGTTCTTAGATGTACAGTCAAATCATATTGTACTTGATATGTGTGCTGCACCAGGTTCAAAAACATTCCAATTGCTTGAGATTTTACACCGATCAACTAAAGCAGGATCACTGCCCGGTGGAATGGTTATAGCAAATGATCTAGATGTACAAAGATGTAATCTTCTCATCCACCAAATAAAACGAATGTGCACAGCAAACCTAATTGTCACCAACCATGAAGCTCAGCACTTCCCAACATGTTATTTGAAAACGGATTGTGATATAATGGGTCCAGATCAGCGTACTTCCCAACTGCTATTTGATCGTGTTCTGTGTGACGTGCCATGCAGTGGTGATGGTACCCTCCGCAAGGCACCTGATCTCTGGAGGAGATGGAACACAGGAACGGGAAATGGGCTTCACAACCTACAAATTTCAGTTGCCATGAGAGGCCTATCTATACTTAAAGTTGGTGGGAAAATGGTTTATTCAACCTGCTCGATGAACCCTATTGAAAATGAAGCTGTTGTTGCAGAGCTTTTGCGGAGGTGTGAAGGGTCTGTTGAACTTGTTGATGTCAGCAGTGAGCTTCCCCAACTTATTCGTCGGCCAGGTCTTAAAAGATGGAAGGTGTGTGACAAGGGTGAGTCCTTGGTTTCCTGTAAAGAGGTTCCCAAGGTTCGTAGAAGTGTAGTTCTTCCCAGCATGTTTCCAAATGGTGGAAGCTATCGAGATATTGACTGTAACGGTAATTGTGATGTTAACGGACATTCTGAAGATGGTGTTGAAACAGTGGAGAATCCTGTAATGCATGAGTTTGCTGAGGAAGTTTCTGAATTTCCACTAGAGCGATGCATGCGGTTACTGCCCCATGATCAGAACTCTGGAGCCTTCTTTATAGCTGTATTGCAAAAACAATCTCCCCTGCCAGCAATTGTGGTAAAAACTAGAAAAGAAGTTGATAATCAACAGGTAGAATCAGTGAACCGTGGTAATGAGGATGTACAAGCATTGCAGATTAATCCATCAGAAATTATACACGAAGAAGTTTGTGAACAAGATTCCGAGGATAATAAAAATGAGCCCAACACTGCAGATTCTAAATTGAGTCCTGTTATAGATGAAGAAAGTGATTCCAAGGAAGCCCAGGAGCCCCGCAATGTAGATAACATAGCAAATGTCACTCCAAGCAAAAGAAAGCTTCAGATACAAGGCAAATGGAGGGGCGTTGACCCTGTTGTCTTCTTCAAAGATGAAGCAATTATTAAGAGTATAAGGGCATTCTATGGTATTGACGAGCAGTTCCCATTAGATGGTCACCTTGTAACAAGAAACAGTGATACAAGTAATGTAAAAAGACTTTACTACATCTCCAAGTCAGTCAAGAATGTTCTAGAGTTGAACTTCTCAGTTGGGCAGCAACTTAAAATAACATGTGTTGGCTTGAAAATATTTGAAAGACAAAAGTCGCGTGAAGGTAGATCTGTAGAATGTGCTTTCCGAATCACTTCTGAAGGATTACCCCTTATCCTCCCTCACATCACCAAACAGATCCTAAGCGCATCTCCTATAGATTTCAAGCATCTTCTCCAGTATAAAAATATAAAATTTGCAGATTTTGTCGATGCTAAATTTGGTGAAAAGGCAGCGAACTTAATGCCAGGCTGTTGCGTGGTCGTTCTGGGTGAAGGGAACAAAACCGCAGAGGCCTTCCAAGTGAATGAATCATCAATAGCCATTGTATGCTGGAAGGGTGGCGCAAGTTTGACCGTGATGGTTACCTCAATAGAATGCCAAGAACTGCTTGAAAGGCTTTTAATGCGTCCAAACAAGGTAACAGAAAAGGGATCCTCCAAGCAGGAGGAGAAGCCATCTAATAACGCTGAAGATGTAAAACAGGAGTCAAACGGTAACAACCAAGACGTGGAAGCTGCTTGA 2421 0.4254 MGRGRGGKSRTQRKHFQQNRENVWKPPRPESLPSPTNLFDIQNADFDHYYKDQNIVSPEEWDSFMQLLRTPLPAAFRINSSSLFHADIRSQLENDFAPDLQSMVDEGDEEDAIKPLPWYPDNFAWHSNFSRMQLRKNQALKRFHEFLKLENEIGNITRQEAVSMVPPLFLDVQSNHIVLDMCAAPGSKTFQLLEILHRSTKAGSLPGGMVIANDLDVQRCNLLIHQIKRMCTANLIVTNHEAQHFPTCYLKTDCDIMGPDQRTSQLLFDRVLCDVPCSGDGTLRKAPDLWRRWNTGTGNGLHNLQISVAMRGLSILKVGGKMVYSTCSMNPIENEAVVAELLRRCEGSVELVDVSSELPQLIRRPGLKRWKVCDKGESLVSCKEVPKVRRSVVLPSMFPNGGSYRDIDCNGNCDVNGHSEDGVETVENPVMHEFAEEVSEFPLERCMRLLPHDQNSGAFFIAVLQKQSPLPAIVVKTRKEVDNQQVESVNRGNEDVQALQINPSEIIHEEVCEQDSEDNKNEPNTADSKLSPVIDEESDSKEAQEPRNVDNIANVTPSKRKLQIQGKWRGVDPVVFFKDEAIIKSIRAFYGIDEQFPLDGHLVTRNSDTSNVKRLYYISKSVKNVLELNFSVGQQLKITCVGLKIFERQKSREGRSVECAFRITSEGLPLILPHITKQILSASPIDFKHLLQYKNIKFADFVDAKFGEKAANLMPGCCVVVLGEGNKTAEAFQVNESSIAIVCWKGGASLTVMVTSIECQELLERLLMRPNKVTEKGSSKQEEKPSNNAEDVKQESNGNNQDVEAA* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4844 806 PANTHER TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED 1 782 - -
Tpr2g4844 806 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 48 466 IPR029063 -
Tpr2g4844 806 Gene3D Vaccinia Virus protein VP39 42 466 IPR029063 -
Tpr2g4844 806 MobiDBLite consensus disorder prediction 484 553 - -
Tpr2g4844 806 MobiDBLite consensus disorder prediction 486 500 - -
Tpr2g4844 806 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 1 782 IPR023267 GO:0001510
Tpr2g4844 806 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 64 467 IPR001678 GO:0008168
Tpr2g4844 806 MobiDBLite consensus disorder prediction 773 790 - -
Tpr2g4844 806 PRINTS RNA (C5-cytosine) methyltransferase signature 179 189 IPR023267 GO:0001510
Tpr2g4844 806 PRINTS RNA (C5-cytosine) methyltransferase signature 269 281 IPR023267 GO:0001510
Tpr2g4844 806 PRINTS RNA (C5-cytosine) methyltransferase signature 319 335 IPR023267 GO:0001510
Tpr2g4844 806 PRINTS RNA (C5-cytosine) methyltransferase signature 449 466 IPR023267 GO:0001510
Tpr2g4844 806 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 125 146 IPR023270 GO:0016428
Tpr2g4844 806 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 353 372 IPR023270 GO:0016428
Tpr2g4844 806 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 636 648 IPR023270 GO:0016428
Tpr2g4844 806 MobiDBLite consensus disorder prediction 508 524 - -
Tpr2g4844 806 ProSitePatterns NOL1/NOP2/sun family signature. 268 279 IPR018314 GO:0003723|GO:0008168
Tpr2g4844 806 MobiDBLite consensus disorder prediction 532 546 - -
Tpr2g4844 806 MobiDBLite consensus disorder prediction 791 806 - -
Tpr2g4844 806 MobiDBLite consensus disorder prediction 1 34 - -
Tpr2g4844 806 Pfam 16S rRNA methyltransferase RsmB/F 169 354 IPR001678 GO:0008168
Tpr2g4844 806 MobiDBLite consensus disorder prediction 773 806 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4844 Tpr-Chr2 53992793 54001030 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4844 K15334 - gmx:100808598 1177.16