Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4842 ATGACATCTTCAGTGATTGAAGGTGGACACGATGATGGTAGTAATAGTAAAAATGAACCGTCGGATTTGATAGAAGAAAAAATGAATCCGACGGTTGTAAACCTTTCAATTCCTAATGAAACATTCTTAAAAGCAGCAATTTCTCTCAAGGACGAGGTGGTGGAGGTGACATGGAAACGGCGAGAAGTGGTTGATCCGACGGTGTATACTGGTTTGCTTGGGACGGCGTTCACTTGCCTGAGATCGTACGAGGTTACCGGTTGCCGTGAGGACTTGGTGTTATGTTCGGAGATTATTGACACATGTACCACTGTTGCACGCGCCTCCATAAGACACGTGACTTTTTTGTGTGGTAGAGGAGGCATATACGCGCTTGGAGCTGTCGTTGCTAATTACATGGGGGACCTCCAAAAACGTGACCTGTTTTTGGGTCTATTCATTGAAGTGGCAAAAGAGGAAGCCCTGCCTATTGGACCCGAGGAAGGTGGTTTCGGAATGTCATATGAACTTCTATATGGACGAGCTGGATTCTTATGGGCCGCATTATTCGTAAACAAGCACCTTGGAGATGACACAGTGCCCAAAGACATTCTAATGCCTATTATTGATGCAGTATTAGCTGGTGGTAGAGCAGGAGTGTCTGATATTAAAGATTGTCCATTGATGTATCGATGGCACGGGACTAGGTACTTGGGTGCAGCAAATGGTCTTGCTGGTATTCTTCATGTGCTCCTTCATTTTCCACTTCCAAGTGAAGATGCTGAGGATGTCAAAGGAACTTTGAGATATTTGATAAGTAGAAGGTTCCCTCATAGTGGAAATTACCCTTCAAGTGAAGGGAATCCAAGAGATAAGTTAGTGCAGTGGAGTCATGGTGCAACTGGGATGGCCATTACATTGTCTAAAGCAGCACAGGTTTTTCCAAATGACAGGGAATTGCGAGACGCAGCAATAGAAGCCGGGGAAGTTGTATGGAAAAGTGGATTGGTGAAGAAAGTAGGACTTGCTGATGGAGTATCTGGAAATGCCTATGCTTTTCTTTCACTCTACAAACTAACAAAAGATAGTATATATGAAGAGAGGGCAAAATCATTCTCTTGTTTCTTATATAATAATGCTAGAGCTTTGGCAGTGGAAGGGCAAGAACTTACTGGTGTCAATGGTTACTCTCTCTTCCATGGACTTGCTGGGACAGCATGTCTTTGGTTTGATTTGATTGCACCTGATAAATCTAGGTTTCCTGGATATGAATTATAG 1257 0.4344 MTSSVIEGGHDDGSNSKNEPSDLIEEKMNPTVVNLSIPNETFLKAAISLKDEVVEVTWKRREVVDPTVYTGLLGTAFTCLRSYEVTGCREDLVLCSEIIDTCTTVARASIRHVTFLCGRGGIYALGAVVANYMGDLQKRDLFLGLFIEVAKEEALPIGPEEGGFGMSYELLYGRAGFLWAALFVNKHLGDDTVPKDILMPIIDAVLAGGRAGVSDIKDCPLMYRWHGTRYLGAANGLAGILHVLLHFPLPSEDAEDVKGTLRYLISRRFPHSGNYPSSEGNPRDKLVQWSHGATGMAITLSKAAQVFPNDRELRDAAIEAGEVVWKSGLVKKVGLADGVSGNAYAFLSLYKLTKDSIYEERAKSFSCFLYNNARALAVEGQELTGVNGYSLFHGLAGTACLWFDLIAPDKSRFPGYEL* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4842 418 Pfam Lanthionine synthetase C-like protein 63 418 IPR007822 -
Tpr2g4842 418 PRINTS Eukaryotic LanC-like protein family signature 198 213 IPR020464 -
Tpr2g4842 418 PRINTS Eukaryotic LanC-like protein family signature 266 281 IPR020464 -
Tpr2g4842 418 PRINTS Eukaryotic LanC-like protein family signature 304 325 IPR020464 -
Tpr2g4842 418 PRINTS Eukaryotic LanC-like protein family signature 404 418 IPR020464 -
Tpr2g4842 418 PANTHER LANC-LIKE PROTEIN GCL1 19 418 - -
Tpr2g4842 418 CDD euk_LANCL 68 414 - -
Tpr2g4842 418 Gene3D - 14 418 IPR012341 GO:0005975
Tpr2g4842 418 SUPERFAMILY LanC-like 44 418 - -
Tpr2g4842 418 SMART LANC_like_2 62 418 IPR007822 -
Tpr2g4842 418 MobiDBLite consensus disorder prediction 1 21 - -
Tpr2g4842 418 PRINTS LanC-like protein superfamily signature 65 83 IPR007822 -
Tpr2g4842 418 PRINTS LanC-like protein superfamily signature 168 183 IPR007822 -
Tpr2g4842 418 PRINTS LanC-like protein superfamily signature 230 246 IPR007822 -
Tpr2g4842 418 PRINTS LanC-like protein superfamily signature 286 306 IPR007822 -
Tpr2g4842 418 PRINTS LanC-like protein superfamily signature 333 346 IPR007822 -
Tpr2g4842 418 PRINTS LanC-like protein superfamily signature 388 405 IPR007822 -
Tpr2g4842 418 PANTHER LANC-LIKE PROTEIN 19 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4842 Tpr-Chr2 53973340 53979908 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4842 - - gmx:100785406 719.924