Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4808 ATGGATTCAGGATCTTTGAGTTCTCCCGCCGTCAAAATTGAATCACGCTATCCTCTTCGGAGAAAGACTTCCAGAGAGAATTTGGACAGATTCATACCGAATAGATCGGCAATGGACTTCGATTTTGCTCACTACATGCTGACAGAAGGAGCTAAAGGTAAGGAAAACCCAGTTGTGTGCTCCCCTTCCAGACAGGCTTACAGGAAGCTACTTGCAGAAGCTTTAAACATGAACCGGACCAGGATTCTAGCTTTCAAGAACAAGCCGCCTACGCCAGTTGATTTGATCCCTCATGAGATTACTTTATCAATTCATCAACAAGACAGAACCGCCAAGCCCAGGCGAATTATTCCTCAGACTTCTGAGAGGACATTGGATGCTCCTGGCCTTGTGGATGATTATTACCTCAATTTATTGGATTGGGGAAGTGCCAATGTTCTTGCAATAGCACTTGGAAACACAGTGTATTTGTGGGATGCATCAAACGGTTCCACTTCAGAACTCGTTACCGTGGATGAAGAAAATGGCCCGATCACATCCGTAAGCTGGGCTCCTGATGGGCGTCATATTGCTGTTGGTTTGAACAACTCTGAAGTTCATCTGTGGGATACGGCTTCAGATAAGCAGTTGAGAACTTTAAGAGGTGGGCATAGGCAGCGTGTGGGGTCTTTGGCATGGAACAATCGCATACTAACAACTGGAGGGATGGATGGTAGAATCATCAATAATGATGTAAGAATTAGATCACCCATTGTTGAAACATACAGAGGGCATGAGCAAGAAGTTTGTGGGTTGAAATGGTCTGCTTCAGGTCAACAATTAGCCAGTGGTGGGAATGATAATCTACTTTATATCTGGGATAGAGGTACAGCATCTTCTAGTTCCCCAACACAGTGGCTCCACAGGCTTGAGGATCATACATCTGCAGTAAGGTCACTTGCTTGGTGTCCTTTCCAAAGGAATTTGCTAGCTACTGGTGGAGGTAGTGGCGATCAAAGCATCAAGTTTTGGAATACACACACAGGTGCATGCTTGAACTCAGTTGACACTGGGTCTCAGGTATGTTCCCTGTTGTGGAACAAGAATGAGAGGGAGTTGCTCAGCTCTCATGGATTTACACAGAATCAACTAACACTTTGGAAATATCCTTCAATGGTGAAGATGGGAGAGCTCAATGGTCACACTTCAAGAGTTCTTTATATGGCGCAGAGCCCGGATGGTTGCACAGTGGCAACAGCAGCCGCAGACGAAACATTGAGGTTTTGGAATGCTTTTGGCACTCCAGAAGTAGTCACCAAAGCTGCACCAAAAGCGAGAGCAGAGCCATTTTCACATATGAATCGCATTCGATAA 1353 0.4538 MDSGSLSSPAVKIESRYPLRRKTSRENLDRFIPNRSAMDFDFAHYMLTEGAKGKENPVVCSPSRQAYRKLLAEALNMNRTRILAFKNKPPTPVDLIPHEITLSIHQQDRTAKPRRIIPQTSERTLDAPGLVDDYYLNLLDWGSANVLAIALGNTVYLWDASNGSTSELVTVDEENGPITSVSWAPDGRHIAVGLNNSEVHLWDTASDKQLRTLRGGHRQRVGSLAWNNRILTTGGMDGRIINNDVRIRSPIVETYRGHEQEVCGLKWSASGQQLASGGNDNLLYIWDRGTASSSSPTQWLHRLEDHTSAVRSLAWCPFQRNLLATGGGSGDQSIKFWNTHTGACLNSVDTGSQVCSLLWNKNERELLSSHGFTQNQLTLWKYPSMVKMGELNGHTSRVLYMAQSPDGCTVATAAADETLRFWNAFGTPEVVTKAAPKARAEPFSHMNRIR* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4808 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 423 IPR001680 GO:0005515
Tpr2g4808 450 PANTHER CELL DIVISION CYCLE 20.2, COFACTOR OF APC COMPLEX-LIKE 1 448 - -
Tpr2g4808 450 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 1 448 IPR033010 GO:0010997|GO:0097027|GO:1904668
Tpr2g4808 450 Pfam Anaphase-promoting complex subunit 4 WD40 domain 170 228 IPR024977 -
Tpr2g4808 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 171 203 - -
Tpr2g4808 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 171 212 IPR001680 GO:0005515
Tpr2g4808 450 SUPERFAMILY WD40 repeat-like 89 423 IPR036322 GO:0005515
Tpr2g4808 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 391 423 - -
Tpr2g4808 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 303 347 IPR001680 GO:0005515
Tpr2g4808 450 Pfam WD domain, G-beta repeat 300 338 IPR001680 GO:0005515
Tpr2g4808 450 Pfam WD domain, G-beta repeat 388 423 IPR001680 GO:0005515
Tpr2g4808 450 Pfam WD domain, G-beta repeat 253 287 IPR001680 GO:0005515
Tpr2g4808 450 ProSitePatterns Trp-Asp (WD) repeats signature. 325 339 IPR019775 -
Tpr2g4808 450 CDD WD40 153 423 - -
Tpr2g4808 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 287 - -
Tpr2g4808 450 SMART WD40_4 206 244 IPR001680 GO:0005515
Tpr2g4808 450 SMART WD40_4 384 423 IPR001680 GO:0005515
Tpr2g4808 450 SMART WD40_4 341 381 IPR001680 GO:0005515
Tpr2g4808 450 SMART WD40_4 248 287 IPR001680 GO:0005515
Tpr2g4808 450 SMART WD40_4 296 338 IPR001680 GO:0005515
Tpr2g4808 450 SMART WD40_4 164 203 IPR001680 GO:0005515
Tpr2g4808 450 Gene3D - 78 425 IPR015943 GO:0005515
Tpr2g4808 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 287 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4808 Tpr-Chr2 53622985 53625808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4808 227 423 Miscellaneous Gene Families AT5G08390 22.727 1.17e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4808 K03363 - gmx:100784841 793.882