Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4759 ATGAAGTGTTTATCCATCATTTCTCTCTGCATTCTCCTCTGTCTCTTCTATTTTCAAGGTGTGTCATCTAAAAATGTATCTGAGAGTGTTCTACAGCTAGCTAGTGTTCCACCAAGAGGTTGGAATTCCTATGATTCTTTTTGCTGGACAATTTCTGAACAAGAATTCTTACAAAGTGCTGAAATAGTTTCTCAGCGTCTCCATGATCATGGATACGAGTATGTTGTGGTGGATTATCTCTGGTATAGAAGGAAAGTTGAGGGCGCTTTTCATGATTCTCTTGGATTTGACGTGATTGATGAATGGGGGAGGATGATTCCTGACCCGGGAAGGTGGCCTTCTTCACAAGATGGGAAAGGGTTCAGAGAAGTAGCTAATCGAGTGCATAGTTTGGGTTTAAAGTTCGGGATTCATGTTATGAGAGGGATAAGCACACAAGCTGTCAATGCAAACACGCCTATCCTAGATACAACAACGGGAGCTGCTTATCAAGAATCTGGTCGAGTGTGGCATGCAAAAGACATAGCAATACCCGAAAGGGTTTGTGCATGGATGACTAATGGTTTCATGAGTGTAAATACAACGTTGGGTGCTGGCAAAGCTTTTTTGAGGTCCCTTTACGAGCAGTATGCTGCATGGGGTGTTGATTTTGTGAAACATGACTGTGTATTTGGCGATGACTTGGATTTAAATGAAATAAGCTATGTATCAGAGGTTCTCCGGGAGTTTGATCGCCCCATTGTCTATTCTTTGTCTCCTGGAACTAGTGTGACACCAGCCATGGCCAAGGATGTCAGTGGACTGGTTAATTTGTATCGTATAACAGCAGATGACTGGGATAAGTGGAATGATGTTAAAGGTCATTTTGATGTATCGAGGGATTTAGCAACTGCAAATATGATAGGAGCAAAAAGTTTAATGGGGAACTCATGGCCGGATTTGGACATGCTACCATTTGGATGGCTAACCGATCCTAGTAAATGTTATAGTATAAATTCAGGTCCATATAGGTATAGTAACCTCAACCTAGAAGAGAAGAGGACACAGATGACCCTATGGGCAATGGCAAAGTCGCCCCTTATGTATGGTGGCGATGTACGGAAGATTGATCCCACAACATATGATCTTATCACAAATCCTACCCTTCTTGAGATTAATTCTTTTAGCACAAATAATATCGAGTTTCCTTATATCACAAGCTTGAAGCATGAAGATCAGGATTCTGGAAAGCTAATGAGAAGAAGCTACAGAGAAACAAAAACATCATATACACATTCATTAGGCCTCACTAGTTGCACTGATTCAAAAGCAAGTGGTTGGACTAGTGAAAGTCTTGGCCTATATCCTGATAGAATCTGTTGGAAAAGGAGCTTAGGAAACAAGCATCTTGACCCCTTATGCATGCACAAGAGAGAACTGAACTTTGCATCAGATGAAGAGAATATGTATCACGATTATCATCATTTAGTTGCAGCCAACAGAATAAAATTTTGCTTGGATGTTTCTCCAAAACTAAAGCTTACTTCTAAAGAGTTCAAGAGAGGTACATTTTCGCCCTGCAGGCGGGATTCAAATCAGTTATGGCAGTTGAATCTTAATGGGACTCTGGTAAATGGCTATTCTGGCTTATGCGCAACAGTAGAGTCTGTCAAAGCTACTATTAATTCTGCCGGTTTTCGCTCTTGGGTTGCAACAGGAAGAACAGGAGAAGTTTATGTTGCTTTCTTCAATCTAAGTGAACAGAAAGCGGTTTTATCGACGCAAACATCAGACCTAGCTAAGGTTTTGCATGGGAGAGACTTAAGTTCTTGTAAAGGCAGTGAAGTATGGAGTGGAAGTGACATTGTAATAACGCAGGGGACGTTATCAGCAGAAGTGGAAATGCATGGGACTGCACTATTTGTTCTCAATTGCAACTAG 1920 0.412 MKCLSIISLCILLCLFYFQGVSSKNVSESVLQLASVPPRGWNSYDSFCWTISEQEFLQSAEIVSQRLHDHGYEYVVVDYLWYRRKVEGAFHDSLGFDVIDEWGRMIPDPGRWPSSQDGKGFREVANRVHSLGLKFGIHVMRGISTQAVNANTPILDTTTGAAYQESGRVWHAKDIAIPERVCAWMTNGFMSVNTTLGAGKAFLRSLYEQYAAWGVDFVKHDCVFGDDLDLNEISYVSEVLREFDRPIVYSLSPGTSVTPAMAKDVSGLVNLYRITADDWDKWNDVKGHFDVSRDLATANMIGAKSLMGNSWPDLDMLPFGWLTDPSKCYSINSGPYRYSNLNLEEKRTQMTLWAMAKSPLMYGGDVRKIDPTTYDLITNPTLLEINSFSTNNIEFPYITSLKHEDQDSGKLMRRSYRETKTSYTHSLGLTSCTDSKASGWTSESLGLYPDRICWKRSLGNKHLDPLCMHKRELNFASDEENMYHDYHHLVAANRIKFCLDVSPKLKLTSKEFKRGTFSPCRRDSNQLWQLNLNGTLVNGYSGLCATVESVKATINSAGFRSWVATGRTGEVYVAFFNLSEQKAVLSTQTSDLAKVLHGRDLSSCKGSEVWSGSDIVITQGTLSAEVEMHGTALFVLNCN* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4759 639 Gene3D Aldolase class I 15 388 IPR013785 -
Tpr2g4759 639 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 3 636 IPR002241 GO:0004553|GO:0005975
Tpr2g4759 639 PRINTS Glycosyl hydrolase family 27 signature 31 50 IPR002241 GO:0004553|GO:0005975
Tpr2g4759 639 PRINTS Glycosyl hydrolase family 27 signature 125 146 IPR002241 GO:0004553|GO:0005975
Tpr2g4759 639 PRINTS Glycosyl hydrolase family 27 signature 344 365 IPR002241 GO:0004553|GO:0005975
Tpr2g4759 639 CDD GH27 37 386 IPR002241 GO:0004553|GO:0005975
Tpr2g4759 639 CDD RICIN 476 547 IPR000772 -
Tpr2g4759 639 Pfam Alpha galactosidase A 50 145 IPR002241 GO:0004553|GO:0005975
Tpr2g4759 639 Pfam Alpha galactosidase A 207 386 IPR002241 GO:0004553|GO:0005975
Tpr2g4759 639 SUPERFAMILY (Trans)glycosidases 33 386 IPR017853 -
Tpr2g4759 639 Gene3D - 551 638 IPR013780 -
Tpr2g4759 639 Pfam Alpha galactosidase C-terminal beta sandwich domain 560 636 IPR041233 -
Tpr2g4759 639 PANTHER ALPHA-GALACTOSIDASE 3 636 - -
Tpr2g4759 639 SUPERFAMILY Ricin B-like lectins 496 554 IPR035992 -
Tpr2g4759 639 SUPERFAMILY Glycosyl hydrolase domain 555 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4759 Tpr-Chr2 53018309 53023370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4759 11 477 Glycoside Hydrolase AT3G26380 62.979 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4759 - - gmx:100777954 1078.93