Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4753 ATGTATCATCAGCTAGAAACTTGGACAACTTTGGTTGCAATTTTTTTGTGTATAGTTTGTTTTATTGTGAAAGAGATTGTTATGGGAGGGAGTAGTTCAAAAGGGTCTTCTAGGAAGAAGAAGCAGCATGTTTCTTCATTTAGGTCTTCAGGGTCTTCAGGTTCTTCATCTTCATGGAATAATAATAATTATGATGAATATGGATATCCACCACAATCACCATATCCTCAACAGAGTCCTTATCATCAGACACCTCACCATCAAGCTGCATCAGCTCCATTTTATGAGAATTCACAGCCTAAAAAGAAGTTAGATAAGAGGTATTCAAGGATAGCTGATAATTATCATTCACTGGATGAGGTTACTGCTGCTCTTGCAAATGCTGGGCTGGAATCTTCTAATCTCATTGTCGGCATTGATTTCACGAAGAGCAATGAGTGGACAGGGAAGAGTTCATTCAACCGAAAAAGTTTACATCACATTGGAAGTAGTCAAAACCCTTATGAACAAGCAATCTCTATTATTGGGAAAACTCTATCTACTTTTGATGAAGATAACTTAATTCCATGTTTTGGATTTGGAGATGCATCTACACATGATCAAGATGTATTTAGCTTCTATTCAGAAGAACAATTATGCAATGGTTTTGAGGAAGTTTTGGAAAGATACCGAGAAATTGTTCCTCACCTCAAACTTGCAGGACCGACTTCGTTTGCCCCTATTATTGAAATGGCCATAACTATTGTTGAACAAAGTGCTGGCCAATATCATGTCCTTCTCATAATTGCAGATGGACAGGTGACCAGAAGCATCGATACAGAACATGGTCACTTAAGTCCGCAGGAACAGAAGACAATAAATGCGATCGTAAAAGCCAGTGAGTATCCACTGTCAATAGTTTTGGTAGGAGTTGGAGATGGACCGTGGGAGATGATGAAGGAATTTGACGATAACATCCCTTCTCGGGCATTTGACAATTTCCAGTTTGTGAATTTTACTAAGATAATGTCGAAGAATGTAAATCCAACTCGGAAAGAGACAGAGTTTGCTCTTGGAGCTTTGATGGAGATACCATCTCAATATAAGGCAACCATAGAGCTTGGCCTATTGGGTTCACGGAGGGGACATTCACCAGATAGGGTTCCTCTACCTGCTCCAATTTATAATAGGACTTCTTCCAGCATCAGTGGAAAATCTTTTCGGTCAAACAGTTTTCAGCAGAATGTGCCTAGGAGTACTGACTATGGATATGATAGCGGTGTTCACAATCGCACACAACCATCTACAAGCTCTTTACATGATAATAAGGTTTGCCCGATTTGTCTTACCGATGCGAAGGATATGGCTTTTGGTTGTGGGCATCAGACTTGTTGTGGATGTGGAGAAGACCTCGAATTTTGTCCCATTTGTCGGAGCAGAATCAGTACTAGGATAAAGCTTTACTAG 1446 0.399 MYHQLETWTTLVAIFLCIVCFIVKEIVMGGSSSKGSSRKKKQHVSSFRSSGSSGSSSSWNNNNYDEYGYPPQSPYPQQSPYHQTPHHQAASAPFYENSQPKKKLDKRYSRIADNYHSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGKSSFNRKSLHHIGSSQNPYEQAISIIGKTLSTFDEDNLIPCFGFGDASTHDQDVFSFYSEEQLCNGFEEVLERYREIVPHLKLAGPTSFAPIIEMAITIVEQSAGQYHVLLIIADGQVTRSIDTEHGHLSPQEQKTINAIVKASEYPLSIVLVGVGDGPWEMMKEFDDNIPSRAFDNFQFVNFTKIMSKNVNPTRKETEFALGALMEIPSQYKATIELGLLGSRRGHSPDRVPLPAPIYNRTSSSISGKSFRSNSFQQNVPRSTDYGYDSGVHNRTQPSTSSLHDNKVCPICLTDAKDMAFGCGHQTCCGCGEDLEFCPICRSRISTRIKLY* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4753 481 MobiDBLite consensus disorder prediction 32 58 - -
Tpr2g4753 481 MobiDBLite consensus disorder prediction 77 101 - -
Tpr2g4753 481 SMART VWA_4 132 332 IPR002035 -
Tpr2g4753 481 PANTHER COPINE FAMILY PROTEIN 1 28 481 - -
Tpr2g4753 481 SUPERFAMILY vWA-like 133 316 IPR036465 -
Tpr2g4753 481 Pfam Copine 157 370 IPR010734 -
Tpr2g4753 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 418 481 IPR013083 -
Tpr2g4753 481 SUPERFAMILY RING/U-box 429 476 - -
Tpr2g4753 481 MobiDBLite consensus disorder prediction 79 95 - -
Tpr2g4753 481 CDD RING-HC_RGLG_plant 437 481 IPR045317 GO:0061630|GO:0070534
Tpr2g4753 481 PANTHER RING-FINGER PROTEIN 28 481 - -
Tpr2g4753 481 Pfam Zinc finger, C3HC4 type (RING finger) 435 476 - -
Tpr2g4753 481 ProSiteProfiles Zinc finger RING-type profile. 438 471 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4753 Tpr-Chr2 52978265 52982416 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4753 K16280 - gmx:100798816 720.694