Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4727 ATGGCTTCGTATTCTGAACAAGATGGAAAACCTTTACCGAAGTTTGGAGAATGGGATGTAAACGATCCGGCCTCAGCCGAAGGTTTCACTGTTATATTCAACAAGGCTAGAGATGAAAAGAAAATTGCCTCTGCGTCTGGACGATTTCCTTCACAGCGAAGATATGACTCTCGCCGTGTCAAGGATAATAAAAAACTAAACTCGTCCTCAAAGAAAAAGTGGTTTTGCTTTAGCGCTTAG 240 0.4208 MASYSEQDGKPLPKFGEWDVNDPASAEGFTVIFNKARDEKKIASASGRFPSQRRYDSRRVKDNKKLNSSSKKKWFCFSA* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4727 79 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 7 41 IPR008700 -
Tpr2g4727 79 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 6 66 IPR040387 -
Tpr2g4727 79 PANTHER PROTEIN NOI4 6 66 - -
Tpr2g4727 79 MobiDBLite consensus disorder prediction 52 69 - -
Tpr2g4727 79 MobiDBLite consensus disorder prediction 44 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4727 Tpr-Chr2 52659282 52660595 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4727 - - gmx:102669045 133.65