Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4642 ATGAGCATCTTCTCTGCAACGCTAGGTTCATTCAATGCTATCTCTTTCCTTTCACTCTCACATTCACATTCACAACACGACACTTTCAATTTCTTCCCTAAATTCCCTCACAAGTTACAATACTATCGTCATCATAATCATCATCACAACACTTGTTCTAAAATCATGATGGTCTCTAGTAGTAGTAGTAGTAATGATACTCAAATCGATGAATTCGACACTGCTCTTCTTCAACGCCCTTTTGCTCCTAACTCTCTAGATACTCTTCGTCAAGCCAGGAGATCGTCAGATTGGAAGGCTGCAAATGCATACAAAGATAGTGGACTCATTTACAATGGTAGGGTTGAGGGTATTAATTCTGGAGGCCTGCTGCTTCGGTTTTACTCTCTCATGGGATTTCTCCCGTACCCACAGTTGAGCCCGGTGCATTCATGTAAAGAACCAAATAAACCTATCCAAGAAATTGCAAAAGACATGCTTGGTTCCATCTTATCAGTGAAGGTAATTGATGTAGATGAGGAGTCAAGGAAATTGGTCTTATCTGAAAAGAAAGCTTCCTGGTCTAAATATTCAAAATATGTCAATTTAGGGGACATTTTTATAGGAAGAGTCTGTTCTGTTGAGGACTATGGTGCTTTTGTTGAGCTGCGCTTCCCTGACGGTCTTTATCACCTTACTGGACTAATACATATCTCGGAAGTGTCATGGGATCTAGTTCAAGATGTCAGAGACTTCTTAACAAAAGGCGAGGAAGTTAGGGCCAAAGTTATCAGTGTTGATCGCGTAAAATCAAGGATTACACTGTCAATTAAACAGCTAGAAGACGATCCACTTCTAGAAACTCTGGACAAAGTGATTCCTCAGGATGGTTCAGCTGCTCCTGATTCTGTCAGTGATATTATTAAGCCCCTTCCAGGACTTGAAACAATTCTTGAAGAACTACTGCAGGAAGATGGCATATTTGATGCAAGAATCAGCCGTCAGGGGTTTGAAAAAAGAGTGGTCTCACAAGACTTGCAGCTTTGGCTTTCTAACGCACCTCCCATGGAACAAAGGTTTACTCTCCTTGCTCGAGCTGGAAGACAGGTGCAAGAGATACTTCTGAAAACATCCCTTGATCAGGAAGGTATCAAAAAGGCAATACAACGAGTTTTGGAGCGTGTTCCCTAA 1170 0.4145 MSIFSATLGSFNAISFLSLSHSHSQHDTFNFFPKFPHKLQYYRHHNHHHNTCSKIMMVSSSSSSNDTQIDEFDTALLQRPFAPNSLDTLRQARRSSDWKAANAYKDSGLIYNGRVEGINSGGLLLRFYSLMGFLPYPQLSPVHSCKEPNKPIQEIAKDMLGSILSVKVIDVDEESRKLVLSEKKASWSKYSKYVNLGDIFIGRVCSVEDYGAFVELRFPDGLYHLTGLIHISEVSWDLVQDVRDFLTKGEEVRAKVISVDRVKSRITLSIKQLEDDPLLETLDKVIPQDGSAAPDSVSDIIKPLPGLETILEELLQEDGIFDARISRQGFEKRVVSQDLQLWLSNAPPMEQRFTLLARAGRQVQEILLKTSLDQEGIKKAIQRVLERVP* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4642 389 Pfam S1 RNA binding domain 194 271 IPR003029 GO:0003676
Tpr2g4642 389 Gene3D - 191 273 IPR012340 -
Tpr2g4642 389 SUPERFAMILY Nucleic acid-binding proteins 195 284 IPR012340 -
Tpr2g4642 389 ProSiteProfiles S1 domain profile. 108 183 IPR003029 GO:0003676
Tpr2g4642 389 Gene3D - 98 190 IPR012340 -
Tpr2g4642 389 PANTHER OS03G0844900 PROTEIN 4 389 - -
Tpr2g4642 389 SUPERFAMILY Nucleic acid-binding proteins 108 183 IPR012340 -
Tpr2g4642 389 SMART S1_6 106 183 IPR022967 -
Tpr2g4642 389 SMART S1_6 195 271 IPR022967 -
Tpr2g4642 389 ProSiteProfiles S1 domain profile. 197 271 IPR003029 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4642 Tpr-Chr2 51663551 51669752 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4642 - - gmx:100798303 513.457