Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4629 ATGGCTTCTTCTATTAGCATTCATAGTATGCTGATTGGAGTTGTGATAATTAGCTCCTTGATAGCTACATGTTCGGCCAACTTCTATCAAGACTTTGATCTAGCATGGGGTGACCACCGTGCTAAGATATTCAATGGTGGTCAGCTTCTATCTCTTTCTCTAGACAAAATCTCTGGCTCTGGCTTCCAATCCAAGAAAGAGTACTTATTTGGTAGGATTGATATGCAACTCAAACTCGTTGCTGGGAACTCTGCCGGAACTGTCACTGCTTACTACTTGTCATCACAAGGACCAACTCATGATGAAATTGATTTTGAGTTCTTGGGAAATGTTAGCGGCGATCCTTACATTCTCCACACAAATGTGTTTTCTCAAGGCAAAGGAAACAGAGAACAACAATTCTACCTCTGGTTTGACCCAACCAAGAACTTTCACACTTACTCTATCATTTGGAAGCCCCAACACATTATATTTTTAGTTGACAACATTCCCATAAGGATGTTCAAGAATGCTGAATCAGTTGGTGTTCCATTCCCAAAGAACCAACCAATGAGAATCTATTCAAGTCTCTGGAACGCAGATGATTGGGCTACAAGAGGTGGTTTGGTGAAAACTGATTGGTCAAAAGCACCCTTTACAGCTTACTACCGCAATTTCAAAGCCACTGAACTCTCCTCTGTCTCTTCCAATTCCTTCTCTGATTCTGCATTGCAGAACAACGAGCTTGATGCTTATGGTAGAAGAAGATTGAGATGGGTTCAAAAGTACTTCATGATTTATAACTACTGCAATGATCTTAAGCGATTCCCACAAGGTATTCCTGCTGAGTGCAGGCGTTCAAGGTTCTGA 849 0.4134 MASSISIHSMLIGVVIISSLIATCSANFYQDFDLAWGDHRAKIFNGGQLLSLSLDKISGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFSQGKGNREQQFYLWFDPTKNFHTYSIIWKPQHIIFLVDNIPIRMFKNAESVGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATELSSVSSNSFSDSALQNNELDAYGRRRLRWVQKYFMIYNYCNDLKRFPQGIPAECRRSRF* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4629 282 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 22 216 IPR000757 GO:0004553|GO:0005975
Tpr2g4629 282 Gene3D - 13 282 - -
Tpr2g4629 282 PIRSF EndGlu_transf 1 282 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tpr2g4629 282 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 15 9 281 - -
Tpr2g4629 282 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 9 281 IPR044791 GO:0004553
Tpr2g4629 282 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 235 277 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Tpr2g4629 282 ProSitePatterns Glycosyl hydrolases family 16 active sites. 102 112 IPR008263 GO:0004553|GO:0005975
Tpr2g4629 282 Pfam Glycosyl hydrolases family 16 29 209 IPR000757 GO:0004553|GO:0005975
Tpr2g4629 282 CDD GH16_XET 25 277 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tpr2g4629 282 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 280 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4629 Tpr-Chr2 51521150 51522479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4629 1 281 Glycoside Hydrolase AT4G14130 73.611 3.17e-165 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4629 K08235 - gmx:100499905 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4629 2 51521150 51522479 Tpr2g4629 2 51521150 51522479 ECH