Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4617 ATGTCATTCCCTCACTCTCCCAAAGCACTCGCACTCAAATCTCAACTCTTCTCTTTGGCACAAAAGACCAAGAATCCATTCATTGCCAACAAACTCCACGCACAAATCATCAAATCCGGTCTCAATCATCACCATCCCTTCCCCAAAACCCTCATTAACGTATATGCCAAATGCGGCCTCCTCCAACATGCACTCAAACTGTTCGACGCATTGCCTCACCGAGACCATGTTGCTTGGGCCACAATCCTCTCCGCCTGCAACAGCTCCAACCTCCCACACAAAGCCTTCTCCATCTCACTCCCTATTCTCCAACAAGGGTTGCAGCCAGACCACTTTGTTTTCTCTTCTCTCATCAAGGCTTGTGCTAACTTGGGTTCTGTTTATCTCAAGCAAGGGAAACAACTACATGGTCTTTTCTTGCTTTCTCCGTTCTCTGAAGATGATGTTGTTAAGTCTTCGCTTGTTGATATGTATGCTAAATTTGAGTTGCCTGATTATGGGCGTGCTGTATTTGATTCGATTTCTGAGTTGAGTTCGGTTTCTTGGACTGCAATGATATCTGGGTATGCGAGAAGTGGACGAAAGGTTGAGGCTATAAAACTGTTTAGACAGTCTCCGTTTAAGAATTTGTATGCTTGGACTGCTTTGATATCTGGGTTGGTTCAGAGTGGGAATGCAACTGATGCGCTTTACTTGTTTGTTGAAATGAGGCGTGAAGGGGTTAGTATAGCTGACCCTTTAGTTCTTTCAAGTGCGGTTGGTGCTTGTGCAAATGCAGCTGTTTGGGAGCTAGGAAAACAGGTGCATGGTGTAGTCATATCCCTTGGCTATGAGTCATGCTTGTTTATAAGCAATGCACTTGTGGATATGTACGCTAAATGCAGTGACCTTGTTGCTGCAAAATATATATTCTGTGAGATAAGAAGAAAGGATGTTGTTTCTTGGACTTCGATAATTGTTGGCACTGCTCAACATGGGCTGGCAGAGGAGGCATTGACTTTGTATGATGACATGGTTATGGCTGGGATTAGGCCAAATGAGGTGACTTTTGTTGGGTTGATCTATGCCTGTAGTCATGTTGGTCTAGTTAAAAAAGGTCGTGCTCTGTTCAAGTCTATGGTTGAAGATTTTGGAATTAGGCCGTCTTTGCAACACTATACTTGTTTGTTGGATCTTTTTAGTCGATCTGGGCACCTTGATGAGGCAGAGAATCTCATTAAAACAATGCCGTTCAAACCCGATGAACCTACTTGGGCTGCTTTACTTAGTGCTTGTAAGCAGCATGGTAACACTAAGATGGCAGTTAGAATTGCTGATAATCTATTGGATTTAAAACCAGAAGACCCTTCCAGCTATATATTGTTATCTAATGTATATGCCGGAGCTGGAATGTGGGAGAATGTTTCCAAGGTGCGGAAGTTAATGGCGGTCAAAGAAGTTAAAAAGGAGCCAGGTTATAGCTGCATTGACTTGGGAAGAGAAAGCCAGGTGTTTCATGCCGGAGAGGCATCTCAACCAATGAAGGATGAGATACTAGGTTTGATGAGGAAATTAGATGCAGAGATGAAGAAAAGGGGTTATGTTCCTGATACTAGTTCAGTTTTACATGACATGGATCAACAAGAGAAGGAAAGACAACTTTTCTGGCATAGTGAGAGGTTGGCTGTGGCCTATGGGCTTCTTAAGTCTGTTCCGGGAACTATTATACGTATAGTAAAAAATCTTCGTGTTTGTGGAGATTGTCACACTGTGCTGAAGCTCATCAGCACTATAACTAGTAGGGAAATTTATGTTCGAGATGCCAAAAGATATCACCATTTTAAGGATGGGAAATGTTCATGCAATGACTTCTGGTGA 1857 0.4292 MSFPHSPKALALKSQLFSLAQKTKNPFIANKLHAQIIKSGLNHHHPFPKTLINVYAKCGLLQHALKLFDALPHRDHVAWATILSACNSSNLPHKAFSISLPILQQGLQPDHFVFSSLIKACANLGSVYLKQGKQLHGLFLLSPFSEDDVVKSSLVDMYAKFELPDYGRAVFDSISELSSVSWTAMISGYARSGRKVEAIKLFRQSPFKNLYAWTALISGLVQSGNATDALYLFVEMRREGVSIADPLVLSSAVGACANAAVWELGKQVHGVVISLGYESCLFISNALVDMYAKCSDLVAAKYIFCEIRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVMAGIRPNEVTFVGLIYACSHVGLVKKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIKTMPFKPDEPTWAALLSACKQHGNTKMAVRIADNLLDLKPEDPSSYILLSNVYAGAGMWENVSKVRKLMAVKEVKKEPGYSCIDLGRESQVFHAGEASQPMKDEILGLMRKLDAEMKKRGYVPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKSVPGTIIRIVKNLRVCGDCHTVLKLISTITSREIYVRDAKRYHHFKDGKCSCNDFW* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4617 618 Gene3D Tetratricopeptide repeat domain 140 263 IPR011990 GO:0005515
Tpr2g4617 618 Gene3D Tetratricopeptide repeat domain 9 139 IPR011990 GO:0005515
Tpr2g4617 618 Pfam DYW family of nucleic acid deaminases 526 618 IPR032867 GO:0008270
Tpr2g4617 618 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 16 606 - -
Tpr2g4617 618 PANTHER OS11G0661000 PROTEIN 16 606 - -
Tpr2g4617 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Tpr2g4617 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Tpr2g4617 618 Gene3D Tetratricopeptide repeat domain 331 505 IPR011990 GO:0005515
Tpr2g4617 618 TIGRFAM PPR: pentatricopeptide repeat domain 180 204 IPR002885 -
Tpr2g4617 618 TIGRFAM PPR: pentatricopeptide repeat domain 348 382 IPR002885 -
Tpr2g4617 618 TIGRFAM PPR: pentatricopeptide repeat domain 211 242 IPR002885 -
Tpr2g4617 618 TIGRFAM PPR: pentatricopeptide repeat domain 313 347 IPR002885 -
Tpr2g4617 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Tpr2g4617 618 Pfam PPR repeat 386 409 IPR002885 -
Tpr2g4617 618 Pfam PPR repeat 212 241 IPR002885 -
Tpr2g4617 618 Pfam PPR repeat 180 204 IPR002885 -
Tpr2g4617 618 Pfam PPR repeat 50 70 IPR002885 -
Tpr2g4617 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 208 IPR002885 -
Tpr2g4617 618 Pfam E motif 428 489 IPR046848 -
Tpr2g4617 618 SUPERFAMILY TPR-like 206 468 IPR011990 GO:0005515
Tpr2g4617 618 Pfam PPR repeat family 310 358 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4617 Tpr-Chr2 51304111 51306830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4617 14 618 Glycoside Hydrolase AT3G49170 36.319 1.23e-133 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4617 - - mtr:MTR_3g084440 1125.92