Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4614 ATGAAAGTTTTGTTTTCTCTTCTTCTAGTGTTATTCATTGCTTCACCTATCTTATGCGCTAAAGTAGGAAAGTCTAATATTCCAAATGCTTTCAATATTCTTAAGTATGGTGCCAAGGGTGATGGCCATACTGATGATTCAAATGCTTTTTTGAAAGCATGGAAAGATGCGTGCAGTTCAACTAAAGGTACTCCAACACTCATCGTACCAGCAGGCAAAATATTCATGACACAACCTCTTACGTTCCAAGGTCCTTGCAAATCCAGAAGAATGAATGTTATGATTAGGGGAACAATCACTGCTCCAAAAAATCGTGAACATTGGAAATCGGACAGTAATGATCATGATTCATGGATCACATTCAGTCACATAAGTGGGCTTGTTGTTAATGGAGGAGGAACACTTAATGGCCAAGGTGCTTCTTGGTGGGACAAGAATGGGAGTGACAGGCCAACGGCTGTTCGATTTCTTGGATGTGATAATCTAAAACATAACTCATTGACCCACCTCAATAGCCCAAAAAATCATATAAGCATAACCGGATGCGATGGCGTTTTAATCTCTAATGTTAAATTAATTGCACCAGAAACTAGTCCCAATACCGACGGAGTTGATATTTCATCATCAACCAAAGTCTTCATCGAGCATTCAACCATCTCAACTGGTGATGATTGTGTTGCTATTAATAGTGGTTCTAAGTTCATCAACATTACTAATGTTAAATGTGGGCCTGGTCATGGCATTAGTATTGGAAGTCTTGGAAAAAATGGGGAATATGCTACGGTAGAAAATATATACGTGGCACACATTACTTTCACTCGAACAACAAATGGTGCTAGAATCAAGACATGGGAGGGAGGATCTGGATATGCAAGGAAGATAACTTATAAAAATATTACACTTGTTGGAGTGAAGAACCCTGTGATAATTGATCAACAATACAACGCTTTACAAGCTATAGGTAAAGGAGTGAAAATTAGTGATGTTACTTTCCGCAACTTTCGGGGAACCGCAAAAAATAAAAAGGCAATTGAATTGAATTGTGGCAGTATTGGTTGCACAAACATTGTACTTGAAGAGATCAACATATTTGGTCTTAATGGAGAGAGAATGTCTTCATCGTGCAAGAATGCACATGTTACAAGCTCTTCATGTAATCCTACTGTCGCATGCATTGGCAAATGA 1185 0.3848 MKVLFSLLLVLFIASPILCAKVGKSNIPNAFNILKYGAKGDGHTDDSNAFLKAWKDACSSTKGTPTLIVPAGKIFMTQPLTFQGPCKSRRMNVMIRGTITAPKNREHWKSDSNDHDSWITFSHISGLVVNGGGTLNGQGASWWDKNGSDRPTAVRFLGCDNLKHNSLTHLNSPKNHISITGCDGVLISNVKLIAPETSPNTDGVDISSSTKVFIEHSTISTGDDCVAINSGSKFINITNVKCGPGHGISIGSLGKNGEYATVENIYVAHITFTRTTNGARIKTWEGGSGYARKITYKNITLVGVKNPVIIDQQYNALQAIGKGVKISDVTFRNFRGTAKNKKAIELNCGSIGCTNIVLEEINIFGLNGERMSSSCKNAHVTSSSCNPTVACIGK* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4614 394 ProSitePatterns Polygalacturonase active site. 239 252 IPR000743 GO:0004650|GO:0005975
Tpr2g4614 394 Gene3D - 19 391 IPR012334 -
Tpr2g4614 394 Pfam Glycosyl hydrolases family 28 63 383 IPR000743 GO:0004650|GO:0005975
Tpr2g4614 394 SMART pbh1 321 348 IPR006626 -
Tpr2g4614 394 SMART pbh1 262 283 IPR006626 -
Tpr2g4614 394 SMART pbh1 232 252 IPR006626 -
Tpr2g4614 394 SMART pbh1 291 312 IPR006626 -
Tpr2g4614 394 SMART pbh1 182 208 IPR006626 -
Tpr2g4614 394 SMART pbh1 209 230 IPR006626 -
Tpr2g4614 394 PANTHER - 27 392 - -
Tpr2g4614 394 SUPERFAMILY Pectin lyase-like 26 392 IPR011050 -
Tpr2g4614 394 PANTHER - 27 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4614 Tpr-Chr2 51280418 51282589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4614 31 392 Glycoside Hydrolase AT5G27530 48.774 1.43e-120 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4614 K01184 - jre:108997191 407.142