Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4609 ATGGATCCAGTTAGTGAATGGGGAAACACGCCGTTAGTAACCGTCGACCCAGAAATCCACGACTTAATAGAAAAAGAGAAACGCCGTCAATGCCGTGGAATCGAACTCATAGCCTCAGAAAATTTCACCTCCTTCGCAGTCATCGAAGCCCTAGGAAGTGCCCTCACCAACAAATACTCCGAAGGTCTTCCCGGTAACCGTTACTACGGCGGTAACGAATTCATCGATCAGATCGAAAACCTCTGCCGTTCACGCGCTCTAACCGCTTTCCATCTCGACGCTGAAAAATGGGGAGTTAATGTTCAGCCTTACTCCGGTTCACCGGCGAACTTCGCCGCTTACACGGCGGTGCTTCAGCCTCATGATCGGATTATGGGACTGGATCTACCTTCCGGTGGACATTTGACTCATGGTTACTATACTTCCGGTGGGAAGAAAATTTCTGCTACTTCGATTTACTTTGAGAGTTTGCCTTATAAGGTGAATCAGAGTACTGGATTTATTGATTATGATAGGTTGGAAGAGAAAGCTTTGGATTTTAGACCTAAATTGATTATTTGTGGTGGAAGTGCTTATCCTAGAGATTGGGATTATGCTAGGTTTAGACAAGTTGCTGATAAGTGTGGTGCACTTTTGCTTTGTGATATGGCTCATATTAGTGGCCTTGTTGCTGCTCAGGAGGCTAACGATCCCTTTGAGTACTGTGACATTGTCACAACAACAACCCATAAGAGCTTAAGGGGTCCCAGGGCTGGTATGATCTTCTACCGGAAGGGACCTAAGCCACCAAAGAAGGGTCAGCCCGAGAATGCAGTTTATGATTTTGAAGACAAAATCAACTTTGCTGTTTTCCCCTCCCTTCAGGGTGGTCCTCACAACCACCAGATTGGTGCCCTTGCTGTTGCTTTGAAACAGGCCGCGACGCCTGCGTTCAAGGCATATGCCAAGCAAGTTAAGGCCAATGCTGTTGCACTTGGAAATTACTTGATTAGCAAGGGATACCAACTTGTCACCGGCGGAACCGAAAACCATCTTGTCTTGTGGGATCTCCGCCCTCTTGGTTTGACTGGAAATAAGGTGGAAAAACTTTGTGATCTCTGTAACATTACTGTGAACAAGAATGCTGTTTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATTGGTGCCCCAGCTATGACTTCTAGGGGATTGGTTGAGAAGGACTTTGAGCAGATTGGAGAGTTCCTTCACCGTGCAGTAACTCTTACACTAGACATTCAAAAGGAATATGGCAAACTTTTGAAGGATTTCAACAAGGGATTGGTGAACAACAAAGCACTTGAAGACCTCAAAGCTGATGTTGAGAAGTTTTCAGCCTCATTCGATATGCCTGGATTCCTAGTATCTGAGTTGAAGTACAAGGATTAG 1416 0.459 MDPVSEWGNTPLVTVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGLPGNRYYGGNEFIDQIENLCRSRALTAFHLDAEKWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNQSTGFIDYDRLEEKALDFRPKLIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQEANDPFEYCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAATPAFKAYAKQVKANAVALGNYLISKGYQLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLHRAVTLTLDIQKEYGKLLKDFNKGLVNNKALEDLKADVEKFSASFDMPGFLVSELKYKD* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4609 471 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 236 252 IPR019798 GO:0030170
Tpr2g4609 471 Gene3D - 41 316 IPR015421 GO:0003824
Tpr2g4609 471 SUPERFAMILY PLP-dependent transferases 4 463 IPR015424 -
Tpr2g4609 471 Pfam Serine hydroxymethyltransferase 13 411 IPR039429 -
Tpr2g4609 471 Gene3D Aspartate Aminotransferase, domain 1 16 460 IPR015422 GO:0003824
Tpr2g4609 471 Hamap Serine hydroxymethyltransferase [glyA]. 11 461 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Tpr2g4609 471 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 1 470 - -
Tpr2g4609 471 CDD SHMT 15 424 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Tpr2g4609 471 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 1 470 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Tpr2g4609 471 PIRSF SHMT 1 466 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4609 Tpr-Chr2 51138357 51141450 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4609 K00600 - gmx:100815417 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4609 2 51138357 51141450 Tpr2g4609 2 51138357 51141450 ECH