Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4570 ATGTCACTCTATACTACGACCACCCTTGTTGTGGGTTCTTCTTCTTCTTCATTCCCTTGTTCCTTCATCAAAACCAATATTAGCAGCAACATAATCACAACCACATCATCCATATCAGCCACAGCCACAGCCACAGCCACAGCCACACCCAAACATGTCTGGATCCGAAACACCAACAAACAAAAACAAAAACAACACGAACCTATATACTTAGACCGCACCGTCAACATGAACGAACTTCTAACCTCAATCGAACAAACCCAAAACATCGAACAACTCTACTCCCTAATGTCTCCTTACAACGGAAGACAATTATCGATTGGATTCATGGTTTCAATTCTCTCTCGCGAATCCGATTGGCAACGCTCTGTTGCACTTCTCGATTGGATAAACGACATTGCTCAATATTCACCTTCTCTTCAAGCTTACAACGTTGTTCTCCGTAATGTACTTCGTGCTAAACAGTGGCAATTTGCACATGGACTGTTCGATGAAATGCGTCAAAGGGGTCTTTCCCCTGATAAGTACACTTACTCAACTCTCATTACTCATTTTGGTAAAAATGGTTTCTCTGATTCTTCTTTCTTTTGGTTGCAAAAGATGGAACTTGATAATGTTGCTGGTGATCTTGTTTTGTATAGTAATATGATTGAGCTTTCGAGTAGGTTGTGTGATTATTCTAAAGCTATTACTATTTTTAATTCATTGAAATGTTCTGTTGATATTGTACCTGATCTTATACTTTATAATACTATGATTAGTGTGTTTGGTAAGGCTAAGCTTTTTCGAGAGGCTAGGCTTCTTTTTCAAGAGATGAGGGATAACGGTGTTAGCCCGGATACTGTTAGTTACTCGACGCTTCTTGCAATTTATGTTGACAATCGGAAGTTTGTTGAGGCACTTTCTTTGTTTTCTGAAATGAATGAAAGTAAATGTCGTATCGATCTCACTACTTGTAATATTATGATTGATGTTTATGGTCAGCTTGATATGATCAAGGAAGCTGATAGTTTCTTTTGGGGTATGAGGAATTTGGGAATTGAACCCAATGTGGTTAGTTACAACACGATTTTGAGGGTTTATAGAGAGGCTGAGTTATTTGGTGAAGCTGTTCACCTTTTTAGTTTGATGCAAAGGAAAGGTGTACAACCACATGTTGTCACGTACAACACCATGATAAGTATTTATGGAAAATTTCTTGAGCATGAGAAGGCGATGAATCTTATTCAAGAAATGCAGAGTAGAGGTATTCAACCAAATGCTATCACTTATTCAACCATAATATCTATATGGGAAAAGGCGGGGAAATTGGACAGGGCGACCTTACTGTTTCAGAAGTTAAAGACTTCTGGAGTTAAAATTGACGAGGTTCTATATCAGACAATGATTGTGGCTTATCAGAAAGCTGGTTTAGTTGCTCATGCCAAAAGGCTACTTAATGAGCTCAAGCAACCAGATAACGTTTCCAGGGAGACAGCAATCACAATACTTGCCAAAGCCGGAAAAGTTGACGAGGCTATGTGGGTTTTTCGGCAAGCCTTTGATGCTGGCGAGGTGAAAGATATATCTGTATTTGGGTGCATCATTGATATTTTCTCTAGTGATAGAAAGTATGCACATGTGGTTGAAGTGTTTGAGAAGATGAGAGAGGTTGGACATTTTCCTGATTCTAATGTTATTGCTCTTGTGCTGAATGCTTTTGTAAAGCTGCGCAAGTTTGACAAAGCAGATGCTTTATATGGACAGATGTATGAAAAAGGGTGTGTTTTCCCAGACGAAGTTCATTTTCAGATGCTCGATCTAAATGGAGCAAGAAGGTATTTCAAGACGGTAGAGTCATGGTTTAAGAAGCTAGATTCCCATCCCAATATCAACAAGAAGGAGTTGCATTTTGTTGTTGCTAACATTTATAAAAGAGCAGATAGATTTAACGATGCTTTCCGAATCATGAACAGGATGAATCACAAAAACAACGAGTCATGA 1983 0.3878 MSLYTTTTLVVGSSSSSFPCSFIKTNISSNIITTTSSISATATATATATPKHVWIRNTNKQKQKQHEPIYLDRTVNMNELLTSIEQTQNIEQLYSLMSPYNGRQLSIGFMVSILSRESDWQRSVALLDWINDIAQYSPSLQAYNVVLRNVLRAKQWQFAHGLFDEMRQRGLSPDKYTYSTLITHFGKNGFSDSSFFWLQKMELDNVAGDLVLYSNMIELSSRLCDYSKAITIFNSLKCSVDIVPDLILYNTMISVFGKAKLFREARLLFQEMRDNGVSPDTVSYSTLLAIYVDNRKFVEALSLFSEMNESKCRIDLTTCNIMIDVYGQLDMIKEADSFFWGMRNLGIEPNVVSYNTILRVYREAELFGEAVHLFSLMQRKGVQPHVVTYNTMISIYGKFLEHEKAMNLIQEMQSRGIQPNAITYSTIISIWEKAGKLDRATLLFQKLKTSGVKIDEVLYQTMIVAYQKAGLVAHAKRLLNELKQPDNVSRETAITILAKAGKVDEAMWVFRQAFDAGEVKDISVFGCIIDIFSSDRKYAHVVEVFEKMREVGHFPDSNVIALVLNAFVKLRKFDKADALYGQMYEKGCVFPDEVHFQMLDLNGARRYFKTVESWFKKLDSHPNINKKELHFVVANIYKRADRFNDAFRIMNRMNHKNNES* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4570 660 TIGRFAM PPR: pentatricopeptide repeat domain 282 315 IPR002885 -
Tpr2g4570 660 TIGRFAM PPR: pentatricopeptide repeat domain 248 281 IPR002885 -
Tpr2g4570 660 TIGRFAM PPR: pentatricopeptide repeat domain 352 384 IPR002885 -
Tpr2g4570 660 TIGRFAM PPR: pentatricopeptide repeat domain 318 351 IPR002885 -
Tpr2g4570 660 TIGRFAM PPR: pentatricopeptide repeat domain 387 421 IPR002885 -
Tpr2g4570 660 TIGRFAM PPR: pentatricopeptide repeat domain 524 556 IPR002885 -
Tpr2g4570 660 TIGRFAM PPR: pentatricopeptide repeat domain 563 592 IPR002885 -
Tpr2g4570 660 TIGRFAM PPR: pentatricopeptide repeat domain 142 174 IPR002885 -
Tpr2g4570 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 556 590 IPR002885 -
Tpr2g4570 660 PANTHER OS03G0856100 PROTEIN 29 656 - -
Tpr2g4570 660 Gene3D Tetratricopeptide repeat domain 486 660 IPR011990 GO:0005515
Tpr2g4570 660 Gene3D Tetratricopeptide repeat domain 332 485 IPR011990 GO:0005515
Tpr2g4570 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Tpr2g4570 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Tpr2g4570 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Tpr2g4570 660 Pfam PPR repeat 524 552 IPR002885 -
Tpr2g4570 660 Pfam PPR repeat 457 483 IPR002885 -
Tpr2g4570 660 Pfam PPR repeat 563 588 IPR002885 -
Tpr2g4570 660 Pfam PPR repeat 494 512 IPR002885 -
Tpr2g4570 660 Gene3D Tetratricopeptide repeat domain 83 219 IPR011990 GO:0005515
Tpr2g4570 660 Gene3D Tetratricopeptide repeat domain 220 331 IPR011990 GO:0005515
Tpr2g4570 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 521 555 IPR002885 -
Tpr2g4570 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Tpr2g4570 660 Pfam PPR repeat family 384 428 IPR002885 -
Tpr2g4570 660 Pfam PPR repeat family 140 185 IPR002885 -
Tpr2g4570 660 Pfam PPR repeat family 316 358 IPR002885 -
Tpr2g4570 660 Pfam PPR repeat family 244 288 IPR002885 -
Tpr2g4570 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Tpr2g4570 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Tpr2g4570 660 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 29 656 - -
Tpr2g4570 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4570 Tpr-Chr2 50563620 50565927 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4570 336 653 Glycosyltransferase AT1G05670 21.362 7.65e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4570 - - mtr:MTR_3g083680 1028.08