Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4568 ATGAGTATACCATTTTCTGTGGCAGCTAAGCCTTCCACTATTAGGACTAATAGGAAACCATGTTGTAGAAAGTATGATGTTATTGTAAGATCAGAATTAACCATGGCTCCAAAACATAGAACAACCACCTTGTTTCCTCAGTTGTCAAATCAAGGAGTTTCTGTTGCTGATTTACATGTACAAGAAGTTGTTGAAAAACAGTCTCAAACAACCAATTTTGACACTCTATGTTCTAATTTTAAGCCACAGTTTGAGCCTAGTTTTCTCAAGGATGCCTATGAAATGTGTAGAAACATTTGTGCAGAATATGCCAAGACATTCTATCTAGGAACTTTGCTTATGACTGAAGAAAGACAGAAGGCTATATGGGCTATATATGTTTGGTGCAGAAGGACAGATGAGCTAGTTGATGGTCCTAATGCCGACTATATGAGCTCTGCTGTTCTTGATCGGTGGGAAGATAGATTGGATGACATTTTCAATGGACAACCCTATGATATGCTTGATGCTGCTCTTACTGATACAGTTTCCAAATTTCCCTTAGATATTAAGCCTTTTCGGGACATGATAGAAGGTATGAGAATGGATACAAGGAAAACGCGATACAAAAATTTCGAAGAATTATATCTATACTGCTACTATGTGGCCGGAACCGTTGGGTTGATGAGTGTTCCGGTAATGGGAATTGCCCCGGAGTCCCTCATCCCTGCTCAAAGTGTTTATAACTCAGCATTATATCTTGGTATTGGAAATCAACTCACAAACATTCTTAGAGATGTTGGCGAAGATGCTTTGAGAGGTAGAGTGTACCTTCCACAAGATGAACTTGGTGAGTTTGGTTTATGTGACAAAGATGTTTTCTCAGGAAAAGTGAGTGAAAGATGGAAAGAGTTTATGAAACAGCAGATTGCAAGGGCAAGATTCTACTTCAACTCTGCAGAAGAAGGAGCTTCTCACCTTGACAAGGCCAGCCGCTGGCCGGTTTGGTCGTCATTAATATTGTATCGAAAGATCTTAGATGCAATTGAAGACAACGATTATGATAATTTAACAAAACGAGCGTATGTAGGACGAACTGAGAAGTTTGTGTCTTTGCCTGCAGCTTATTCTAAATCTCTCTCAATTCCCAAAACGGAGTCGCATCCTTCCTTCACGAGGCTTATGTAG 1167 0.3976 MSIPFSVAAKPSTIRTNRKPCCRKYDVIVRSELTMAPKHRTTTLFPQLSNQGVSVADLHVQEVVEKQSQTTNFDTLCSNFKPQFEPSFLKDAYEMCRNICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNADYMSSAVLDRWEDRLDDIFNGQPYDMLDAALTDTVSKFPLDIKPFRDMIEGMRMDTRKTRYKNFEELYLYCYYVAGTVGLMSVPVMGIAPESLIPAQSVYNSALYLGIGNQLTNILRDVGEDALRGRVYLPQDELGEFGLCDKDVFSGKVSERWKEFMKQQIARARFYFNSAEEGASHLDKASRWPVWSSLILYRKILDAIEDNDYDNLTKRAYVGRTEKFVSLPAAYSKSLSIPKTESHPSFTRLM* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4568 388 ProSitePatterns Squalene and phytoene synthases signature 1. 211 226 IPR019845 GO:0016765
Tpr2g4568 388 Gene3D Farnesyl Diphosphate Synthase 86 368 IPR008949 -
Tpr2g4568 388 PANTHER PHYTOENE SYNTHASE, CHLOROPLASTIC 2 378 - -
Tpr2g4568 388 ProSitePatterns Squalene and phytoene synthases signature 2. 247 272 IPR019845 GO:0016765
Tpr2g4568 388 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 2 378 - -
Tpr2g4568 388 SFLD Isoprenoid Synthase Type I 90 371 - -
Tpr2g4568 388 SUPERFAMILY Terpenoid synthases 91 373 IPR008949 -
Tpr2g4568 388 CDD Trans_IPPS_HH 94 361 IPR033904 GO:0004311
Tpr2g4568 388 SFLD Phytoene synthase like 90 371 IPR044843 GO:0004311
Tpr2g4568 388 Pfam Squalene/phytoene synthase 103 358 IPR002060 GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4568 Tpr-Chr2 50538239 50540786 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4568 K02291 - gmx:100782394 590.882