Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4566 ATGGCGAAGAAAGTAAAAAAGAAGAGTCGAAGTTTTGTTAAGGAGAAGGAGGTTGCTGCTACTGTTACTGAATTGGACAACCCAACTATTGAGTCTGTTGATGAAGGGGTTTCAGTTGCAAAAGAGACAAATCCTTGCCCTCATCTTGCTAAAGGTGTTAATTTAGAACAATTGTCTCGTAAGATTGAGTCTTCTAGGTCCACAAGTTGTGAAGATTGTAGGGAAGGGGCGGCTGATAGGAGGGGCAGTAAAGGAAAAGGTAAACATGGAAAGAAGAAAGGCGGTGCATCATCAGAATCCAAATCTGATTCGAAGTCTATATGGGTTTGTTTGGAATGTGCACACTATACCTGTGGAGGTGTGGGGCTACCAACAACCCCTAATTTTCATGCTGTTGGGCATGCAAGGAAAACACGACACCCATTAACTGTTAATATTGACAAACCTCAACTTTGTTGGTGTTTTCGTTGCGATATGCTTATTCAAGTTGATAAAATTGAAAAAACTGATGAAACAAGTCATCCTATATCTGATGTTGTGAAATTGCTCAAAGGACGATCTTCGGCAAAATCGTTAGTGGATACTGAAGATGTTTTCATTGGGGGTGGCAGTGTTACTGCAGAAATTAAGTCAGGATCTCTGTCTGTAAGTGGTTCATACGGACAGCGTGGTTACGTAGTTCGAGGCATGGTTAATCTTGGGAATACTTGTTTCTTTAATTCAATCATGCAAAATCTGCTTGCTATGAATAAATTGCGGGACAATTTTCTGAAGACCGATGCTCCTGTCGGGCCACTGATTAGTTCGTTGAAGAAGCTGTTCACTGAAACAAACCCAGAATCAGGATTGAAAAATAGTATAAATCCGAGATCCTTTTTTGGCAATGTATGTTCTAAGTCTCCCCAATTTCGAGGATATCAGCAACATGACAGTCATGAATTGCTCCGTTGTTTACTGGATGGGTTGAGTACTGAAGAGCTGGCTGGAAGGAAGCAGAATGGTTCTCTTGAGACAGACGGAACCTCTTCCAATACTTTGGTCGATGCTTTATTTGGGGGTCAGATATCTAGTACTGTATGTTGCAACGAATGTAAGCATTCCTCAACAGTGTATGAGCCTTTTTTAGATCTTTCCCTCCCCGTTCCAACTAAGAAACCTCCGCCTCGGAAGGCTCCACAAGTGTCCAGAACCAAAAAGACAAAACTTCCACCCAAAAAAGGAGGAAAGACTCAGACTCGAGTCAAAGTTAACAGGGATGCTGACCCCTTACCCGTTCAAAATGTACCAGGCCAATCATTCAGCCATGAATCATCCTGCCCTGACCAGTCTGTCATATCAGTTTCTGGAGAAAGGGCTGCTTCTTCTGGTGATTCTACGGTATTAGATTCTGAAGAAATAAGCAGCGTGGCCAATAAAGAGGATATCTCTCCACCTAATTTGGTTACTGTTGAAGAGTCTCAACAAATGCAAGTGGTTGACAGTGTTGCAAATAAAATATCAGAATCATCGGATGATTTTGCTTGGTTGGATTATGTGGGAGCTGAAACCATGATAGACGAAGATGCTTCCGTATCCCAGAAGGAAGATGCACCGGAGGTACAAAATTCTGATCCCTTACCCGTTCAAAATGTACCAGGCCAATCATTCAGCCATGAATCATCCTGCCCTGACCAGTCTGTCATATCAGCTTCTGGAGAAAGGGCTGCTTCTTCTGGTGATTCTACGGTATTAGATTCTGAAGAAATAAGCAGCGTGGCCAATAAAGAGGATATCTCTCCACCTAATTTGGTTACTGTTGAAGAGTCTCAACAAATGCAAGTGGTTGACAGTGTTGCAAATAAAATATCAGATTCATCAGATGTGGGAGCTGAAACCATGATAGACGAAGATGCTTCTGTATCCCAGAAGGAAGATGCACCGGAGGTACAAAATTCTGAGATCAAGGATGAACGTTTGACTGTTTTCACTGAACAAGCTAGTTGTGAAACCAGCGGTCCTGATTCTTTCCTTCGGGAGGATCAAAACCTAAGACCTGATTTTTCTTCAGCAAATGGGTTGGAAGATGAGGTTCCTTTACAAGTTCAAAATTCAGAAGTGCTTTTACTTCCATACAAACAAGTTCAAAATTCAGAAGTGCTGTTACTTCCATACAAAGAAGAAAGTTCCTCGGCCGGGGTTATCATTGAAAGAGATAACGAGGCCTCCTCGTCTGTTTTGGGTGGTGGTCCAGAAGAATCGGAGTTTGATGGCTTTGGTGGCTTATTTAATGAGCCTGAAATTTTTGCTGGGCCTGCTCCCAGGCCTTCTTCATCTGGTGATGTGGATGCTGGCATTATCATAAGAAACAACAGTGAATCTGATCCAGATGAAGTAGATGATACAGATTCTCCGGTTTCTGTGGAGAGTTGCTTGGCTCATTTTATAAAACCTGAGCTTCTTTCAGATGACAATGCTTGGCATTGTGAGAACTGTTCAAAAATCCTCCGACGTCAAAAGAAGAAAGCAAAACAGCAGGCAAGAACTCTATCTGATGGAAATGCGAGTGGTAGTCATGATGAATCACAGAATACATCTAACTCGTGTTCTTTTGAAGTCAGTAGTACAGGAAATGGAGATATTAAAAATGACAAGAGTATAGAAAGTTCAGTTTCACATGTTCAACATGGCACAGAGCTTGAAAACAGTCAAACAGATGAGCTGCAGAATGATGAATTACAGTCTTCATGTTCACAACAAGCTTGCAATGAAGAAAGCCGCAATAATTCAGCTTCTTCTTGTATTACTGGAAATGTCCAACAAGATGCTCCAATGTTAGATAATGATGACAATGACTCGGAAGAATGCAGCGATAAAGAGACCGACTTAGAAAGCATGAGAGTGAATAGGGATGCAACTAAGAGGGTCCTCATTTATAAAGCTCCGCCTGTCTTGACCATTCATCTGAAGAGATTCAGCCAAGATGCTCGTGGCCGCTTAAGTAAATTAAACGGTCATGTCAACTTCAGAGAAACAATGGATTTTAGACCATATATGGATCCCAGGTGTATAAATGAAGAGAAGTATGAATACCAGTTGGTTGGTGTAGTGGAGCATTCGGGAACCATGCGAGGTGGTCACTATGTTGCCTATGTGAGAGGGGGCCAGAGGAACAGAGAGAAGGTTGCTAATAAAGAAAACGAGAGTTCCACATGGTATCATGCGAGTGATGCATATGTGCGTGAAGTTTCCCTTGATGAAGTTCTTCGCTGCGAGGCATACATTTTGTTTTACGAAAGAAAATGA 3282 0.4196 MAKKVKKKSRSFVKEKEVAATVTELDNPTIESVDEGVSVAKETNPCPHLAKGVNLEQLSRKIESSRSTSCEDCREGAADRRGSKGKGKHGKKKGGASSESKSDSKSIWVCLECAHYTCGGVGLPTTPNFHAVGHARKTRHPLTVNIDKPQLCWCFRCDMLIQVDKIEKTDETSHPISDVVKLLKGRSSAKSLVDTEDVFIGGGSVTAEIKSGSLSVSGSYGQRGYVVRGMVNLGNTCFFNSIMQNLLAMNKLRDNFLKTDAPVGPLISSLKKLFTETNPESGLKNSINPRSFFGNVCSKSPQFRGYQQHDSHELLRCLLDGLSTEELAGRKQNGSLETDGTSSNTLVDALFGGQISSTVCCNECKHSSTVYEPFLDLSLPVPTKKPPPRKAPQVSRTKKTKLPPKKGGKTQTRVKVNRDADPLPVQNVPGQSFSHESSCPDQSVISVSGERAASSGDSTVLDSEEISSVANKEDISPPNLVTVEESQQMQVVDSVANKISESSDDFAWLDYVGAETMIDEDASVSQKEDAPEVQNSDPLPVQNVPGQSFSHESSCPDQSVISASGERAASSGDSTVLDSEEISSVANKEDISPPNLVTVEESQQMQVVDSVANKISDSSDVGAETMIDEDASVSQKEDAPEVQNSEIKDERLTVFTEQASCETSGPDSFLREDQNLRPDFSSANGLEDEVPLQVQNSEVLLLPYKQVQNSEVLLLPYKEESSSAGVIIERDNEASSSVLGGGPEESEFDGFGGLFNEPEIFAGPAPRPSSSGDVDAGIIIRNNSESDPDEVDDTDSPVSVESCLAHFIKPELLSDDNAWHCENCSKILRRQKKKAKQQARTLSDGNASGSHDESQNTSNSCSFEVSSTGNGDIKNDKSIESSVSHVQHGTELENSQTDELQNDELQSSCSQQACNEESRNNSASSCITGNVQQDAPMLDNDDNDSEECSDKETDLESMRVNRDATKRVLIYKAPPVLTIHLKRFSQDARGRLSKLNGHVNFRETMDFRPYMDPRCINEEKYEYQLVGVVEHSGTMRGGHYVAYVRGGQRNREKVANKENESSTWYHASDAYVREVSLDEVLRCEAYILFYERK* 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4566 1093 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 180 IPR013083 -
Tpr2g4566 1093 MobiDBLite consensus disorder prediction 528 595 - -
Tpr2g4566 1093 MobiDBLite consensus disorder prediction 57 99 - -
Tpr2g4566 1093 Gene3D Cysteine proteinases 843 1093 - -
Tpr2g4566 1093 Gene3D Cysteine proteinases 775 842 - -
Tpr2g4566 1093 MobiDBLite consensus disorder prediction 835 913 - -
Tpr2g4566 1093 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 1092 - -
Tpr2g4566 1093 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 1023 1040 IPR018200 GO:0004843|GO:0006511
Tpr2g4566 1093 SMART Zf_UBP_1 98 151 IPR001607 GO:0008270
Tpr2g4566 1093 Gene3D Cysteine proteinases 216 410 - -
Tpr2g4566 1093 MobiDBLite consensus disorder prediction 427 465 - -
Tpr2g4566 1093 ProSiteProfiles Zinc finger UBP-type profile. 44 180 IPR001607 GO:0008270
Tpr2g4566 1093 MobiDBLite consensus disorder prediction 630 648 - -
Tpr2g4566 1093 MobiDBLite consensus disorder prediction 381 465 - -
Tpr2g4566 1093 MobiDBLite consensus disorder prediction 840 913 - -
Tpr2g4566 1093 CDD Peptidase_C19K 904 1091 - -
Tpr2g4566 1093 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 228 1093 IPR028889 -
Tpr2g4566 1093 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 3 1092 - -
Tpr2g4566 1093 MobiDBLite consensus disorder prediction 391 408 - -
Tpr2g4566 1093 MobiDBLite consensus disorder prediction 520 595 - -
Tpr2g4566 1093 MobiDBLite consensus disorder prediction 65 83 - -
Tpr2g4566 1093 MobiDBLite consensus disorder prediction 628 648 - -
Tpr2g4566 1093 MobiDBLite consensus disorder prediction 936 955 - -
Tpr2g4566 1093 SUPERFAMILY RING/U-box 45 162 - -
Tpr2g4566 1093 Pfam Zn-finger in ubiquitin-hydrolases and other protein 70 163 IPR001607 GO:0008270
Tpr2g4566 1093 Pfam Ubiquitin carboxyl-terminal hydrolase 229 1090 IPR001394 GO:0004843|GO:0016579
Tpr2g4566 1093 SUPERFAMILY Cysteine proteinases 227 1092 IPR038765 -
Tpr2g4566 1093 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 229 244 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4566 Tpr-Chr2 50501830 50506294 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4566 229 381 Miscellaneous Gene Families AT2G24640 27.811 1.15e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4566 K11844 - csin:114262760 872.463