Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4372 ATGGCGTGGATGAGTGGCATAAATGGTGATGGGACAGGAACCAAATGGGCTTTCCTAATTGCTGCTTCAAGAGTATTTTCAAATTATAGACATCAAGCTGATATGTTGTCTGAGGAAGATTTTTCATCGGATGTTTTGACATATAATATTGTCATGCTTGCGAAGTACAGTCTTGGGAAGATGAATCTGTTTCACAGATTGCTTTATGTGATGGAAAGAAGCGGCCTTTCTCCGGATTTTCATACTTATAATATACTTCTACATGTTCTTGGTAGAGGGGATAAGCCACTTGCTTCCGTTGATCTTTTGAATCACATGAGAGAAAGAGGTATAGAACCAACTATTGGCTGCATGCCAGATGTGGTAGCATACACTGTAATGATCACCGGATATGTGGTGGCTTGTGAATTCGAGAAATCTCAGGAAATGTTTGATGAGATGATTTCTAGAGGACAAATTCCAAATGTATTTACCTATAATTCCATGATTCGTGGATTTTGTATGGTGGGAAAGTTTGACGAAGCATGCTCAAAGCTTACGGAAATGGAGACCAAAGGTTGTAGTCCAAATTTTGTTGTCTATAGGACATTAGTGAGTAATCTACGGAATGCTGGAAAGCTTTCTAGAGCTCGAAAAGTGTTACGGCAGATGATGGAGAAGGGAAGGAATGTCCATCAACTTCCCAAGTTAAGAGCGAAACGATATAAGAAATGA 714 0.395 MAWMSGINGDGTGTKWAFLIAASRVFSNYRHQADMLSEEDFSSDVLTYNIVMLAKYSLGKMNLFHRLLYVMERSGLSPDFHTYNILLHVLGRGDKPLASVDLLNHMRERGIEPTIGCMPDVVAYTVMITGYVVACEFEKSQEMFDEMISRGQIPNVFTYNSMIRGFCMVGKFDEACSKLTEMETKGCSPNFVVYRTLVSNLRNAGKLSRARKVLRQMMEKGRNVHQLPKLRAKRYKK* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4372 237 Pfam PPR repeat family 44 90 IPR002885 -
Tpr2g4372 237 Pfam PPR repeat family 119 167 IPR002885 -
Tpr2g4372 237 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 120 154 IPR002885 -
Tpr2g4372 237 TIGRFAM PPR: pentatricopeptide repeat domain 81 114 IPR002885 -
Tpr2g4372 237 TIGRFAM PPR: pentatricopeptide repeat domain 157 190 IPR002885 -
Tpr2g4372 237 TIGRFAM PPR: pentatricopeptide repeat domain 122 156 IPR002885 -
Tpr2g4372 237 TIGRFAM PPR: pentatricopeptide repeat domain 192 221 IPR002885 -
Tpr2g4372 237 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 115 234 - -
Tpr2g4372 237 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 35 115 - -
Tpr2g4372 237 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Tpr2g4372 237 PANTHER OS10G0506000 PROTEIN 35 115 - -
Tpr2g4372 237 PANTHER OS10G0506000 PROTEIN 115 234 - -
Tpr2g4372 237 Gene3D Tetratricopeptide repeat domain 21 116 IPR011990 GO:0005515
Tpr2g4372 237 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Tpr2g4372 237 Pfam PPR repeat 185 217 IPR002885 -
Tpr2g4372 237 Gene3D Tetratricopeptide repeat domain 117 234 IPR011990 GO:0005515
Tpr2g4372 237 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4372 Tpr-Chr2 47545031 47546191 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4372 44 224 Glycosyltransferase AT1G05670 23.757 2.59e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4372 - - mtr:MTR_6g045263 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4372 2 47545031 47546191 Tpr2g4372 2 47545031 47546191 ECH