Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3889 ATGGCTATGTCTGCATCATCTTCTCTAACAGCATCTTCCTATTCCTTCCCATTCACCAAATCTTCTTCTAACCCAATTCCCATATTTTCTTGTTCTTTTCCTCTCAAACACCATACCCTCCTTCCCAATCTCAAATCATCACCACCACGATTTGTCCCAGCCTCAGGAGCTGCTGCTACACCCACAACCTCAATTGAAATAGAAAAATCCCCAATCTCTGCAACTCCTTCAAAAGTTCTTCCTTTTCGTGTTGGGCATGGTTTTGACCTTCATCGATTGGAACCTGGTTATCCATTAATTATTGGTGGAATTAATATACCCCATGATAGAGGTTGTGAGGCTCATTCTGATGGGGATGTTCTGCTTCACTGCGTGGTTGATGCAATTTTAGGGGCTTTAGGTCTTCCTGATATAGGCCAGATTTTTCCTGATTCTGATCCTAAGTGGAAGGGTTGCGACTCTTCGGTGTTCGTCCATGAATCTGTCAGGCTTATGCATGAGGCAGGTTATGATATTGGAAATTTAGATGCAACATTGATACTTCAGAGGCCAAAATTAAGCCCGCACAAGGATGCTATCAAGGCCAACTTATCTGCATTGCTTGGAGTTGACGCTTCTGTGGTAAATATAAAGGCAAAAACTCATGAAAAGGTTGACAGCCTTGGAGAAAATAGAAGTATAGCGGCTCACACAGTTGTTCTTCTAATGAAGAAATGA 717 0.4226 MAMSASSSLTASSYSFPFTKSSSNPIPIFSCSFPLKHHTLLPNLKSSPPRFVPASGAAATPTTSIEIEKSPISATPSKVLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFVHESVRLMHEAGYDIGNLDATLILQRPKLSPHKDAIKANLSALLGVDASVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3889 238 Hamap 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 82 237 IPR003526 GO:0008685|GO:0016114
Tpr2g3889 238 TIGRFAM ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 83 237 IPR003526 GO:0008685|GO:0016114
Tpr2g3889 238 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE 49 238 - -
Tpr2g3889 238 ProSitePatterns 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 116 131 IPR020555 GO:0008685
Tpr2g3889 238 Pfam YgbB family 82 235 IPR003526 GO:0008685|GO:0016114
Tpr2g3889 238 SUPERFAMILY IpsF-like 81 237 IPR036571 GO:0008685|GO:0016114
Tpr2g3889 238 CDD MECDP_synthase 83 235 IPR003526 GO:0008685|GO:0016114
Tpr2g3889 238 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC 49 238 IPR003526 GO:0008685|GO:0016114
Tpr2g3889 238 Gene3D - 79 238 IPR036571 GO:0008685|GO:0016114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3889 K01770 - gmx:100306378 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3889 2 41635193 41638481 Tpr2g3889 2 41635193 41638481 ECH