Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3878 ATGGTTAATCGACGCTTCACTCAGGTAGCCACCAGCGACGAAGATGAAGACGAAGCACCACCACAACCACCACCTCAGCGGAATTCGAAGCTACGCAATCGGAAGAGAATGAAGCTTCTAGACGAAGAAGATAGCGACGATAATGGTGAGATGGAAGGAGTGAAAAAGGAACCGCCGCAGACTCCCGACGATGCAAAACCAATTGGTGATCCGATTAGGGTTTCGGGAAAAGGAAGAGGGAGGAAGAGACATTACGAATCATTCGAATTCGATGGCAATCAATATTCTCTAGAGGATCCTGTAATGCTTCTACCTGAGGATAAAGAACAAAAACCATATGTTGCTATAATTAAGGACATTATACAGTACTTTAGTGGTAGCATAATGGTGGCGGGACAGTGGTTTTATCGTCCTGAAGAAGCTGAAAAAAAAGGCGGTGGAAGTTGGAAGTCATGTGATACAAGGGAGCTTTTTTATAGTTTCCACCGTGATGAGGTTCCTGCAGAGTCTGTTATGCACAAGTGTGTGGTGCATTTTGTTCCCTTAAACAAACAGTTTCCAAAACGTAAGCAACATCCTGGCTTTATTGTACAAAAGGTGTATGATACTTTGGAAAGAAAACTCTGGAAGCTGACTGATAAGGACTTTGAGGATATTAAACAGCAAGAAATTGACGAGCTTGTTCAGAAAACTCGAAAACGCATCGGTGAGCTACTTGACATTGAGCCTGAAGAAGTCCCTCCTGCTGATCAGGAGGTGACAAAAAATAAAAGAAGTTTAAGGAGAAAGAGCATTTCTCCCATTGATGTTTCAAGGGAGGAGGAAGGAGTTCCTAAAACTGACCAACATTCAAAGCCTGAAACACCAGCAAGCTGTGTAAATAATGACTCAAAGTATCATCGCATATTAGTGAAGTTCAATTCACTAACTGGTAACATTCATCGCGACAAATGGTTGGAGAGGCTGCTTCAACACGTTCAGTACATGTGTAATTATGATGAGAGTATAGAAAAGGGAAAGGAATCGGGAAATCCCGATTCTGATGAAATCAAGAATAAAAACAATGATAGAACTTCAGAAATAGCAAGTGACTGTCCGGACAAGGGTCAGAAGAGTTCCAAGTCCTTTGTGTGGCCAGATGCTGCTGTTTCAGCCATAGTTTCTCTTGAAAAAGCTTCACACGAGGCTCTATCAACAGATTTTCAGAAGTATAACCAAAAGTTGCGGCAACTAGATTTTAATCTCAAGAACAATGCGTTGCTAGCATGCCGTCTGTTAAATGGAGAGTTGAAACCTTCAAAAATGTTAAATATGACACCCATTGAATTAAAGGAGGGCTTGACTGCCGAGGAATTAACCAGGAAGGAGCCTGATGAAAAACAGCACATGCAAATGACGGATGCCCGCTGCTCAAGATGCGCGGAACTTAAGGTGGGCTTGAGGGAGATTATCCACGCTGGACACGATGACCGTTATCAGCTGGAATGTGTTGCCTGTGGTAATTCCTGGTATGCCTCCCGGGATGAGGTGTCTGCACTGACCATAGACGGATCAGATTCAAAGAGAAGCTTAGGCATAGCGCCATCAGCCACTGCAAAATTTGAAAATGTTCAGAAGAAGCTGGCGAGTCCCCGTGAATCTGAAAAATCAGCTGATGACATCTCTAAGAAAACAAGTGAACCACGTATGCCTGTTTTGGACACCCAGAAATCACTTGGCAAGCCCAAGAAAGACGACAATATCGAGGCCAAAAGACATGCTGATACGGAATGA 1773 0.4332 MVNRRFTQVATSDEDEDEAPPQPPPQRNSKLRNRKRMKLLDEEDSDDNGEMEGVKKEPPQTPDDAKPIGDPIRVSGKGRGRKRHYESFEFDGNQYSLEDPVMLLPEDKEQKPYVAIIKDIIQYFSGSIMVAGQWFYRPEEAEKKGGGSWKSCDTRELFYSFHRDEVPAESVMHKCVVHFVPLNKQFPKRKQHPGFIVQKVYDTLERKLWKLTDKDFEDIKQQEIDELVQKTRKRIGELLDIEPEEVPPADQEVTKNKRSLRRKSISPIDVSREEEGVPKTDQHSKPETPASCVNNDSKYHRILVKFNSLTGNIHRDKWLERLLQHVQYMCNYDESIEKGKESGNPDSDEIKNKNNDRTSEIASDCPDKGQKSSKSFVWPDAAVSAIVSLEKASHEALSTDFQKYNQKLRQLDFNLKNNALLACRLLNGELKPSKMLNMTPIELKEGLTAEELTRKEPDEKQHMQMTDARCSRCAELKVGLREIIHAGHDDRYQLECVACGNSWYASRDEVSALTIDGSDSKRSLGIAPSATAKFENVQKKLASPRESEKSADDISKKTSEPRMPVLDTQKSLGKPKKDDNIEAKRHADTE* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3878 590 MobiDBLite consensus disorder prediction 536 590 - -
Tpr2g3878 590 ProSiteProfiles BAH domain profile. 93 212 IPR001025 GO:0003682
Tpr2g3878 590 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 584 - -
Tpr2g3878 590 CDD BAH_plant_3 75 221 - -
Tpr2g3878 590 MobiDBLite consensus disorder prediction 337 372 - -
Tpr2g3878 590 MobiDBLite consensus disorder prediction 35 63 - -
Tpr2g3878 590 Pfam Transcription factor S-II (TFIIS), central domain 310 460 IPR003618 GO:0006351
Tpr2g3878 590 SMART BAH_4 93 212 IPR001025 GO:0003682
Tpr2g3878 590 Gene3D - 304 445 IPR036575 GO:0006351
Tpr2g3878 590 SMART mid_6 348 453 IPR003618 GO:0006351
Tpr2g3878 590 MobiDBLite consensus disorder prediction 337 364 - -
Tpr2g3878 590 MobiDBLite consensus disorder prediction 248 282 - -
Tpr2g3878 590 ProSiteProfiles TFIIS central domain profile. 314 471 IPR003618 GO:0006351
Tpr2g3878 590 Gene3D - 60 231 IPR043151 -
Tpr2g3878 590 Pfam BAH domain 94 210 IPR001025 GO:0003682
Tpr2g3878 590 SUPERFAMILY Elongation factor TFIIS domain 2 311 444 IPR036575 GO:0006351
Tpr2g3878 590 MobiDBLite consensus disorder prediction 1 81 - -
Tpr2g3878 590 MobiDBLite consensus disorder prediction 243 293 - -
Tpr2g3878 590 MobiDBLite consensus disorder prediction 539 560 - -
Tpr2g3878 590 MobiDBLite consensus disorder prediction 571 590 - -
Tpr2g3878 590 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3878 Tpr-Chr2 41537634 41541804 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3878 - - cam:101495294 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3878 2 41537634 41541804 Tpr2g3878 2 41537634 41541804 ECH