Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3870 ATGATTAACTTAAAGTTAGGGGTAGATGTGGTTGGGGCTCACAATCTACTCCCTAAAGATGGAGAAGGTTCTTCTAATGCCTTTGTGGAACTTTACTTCGACGGCCAAAAGTTCCGAACAACCATCAAAGAAAAAGATCTTAATCCTGTTTGGAATGAGAGTTTCTACTTCAACATATCAGATCCTTCCAATCTTCACTATCTCACTCTTGAAGCTTATGTCCATTGTCATTCCAAAGCTACTAACTCAAGTTCTTTTCTTGGCAAAGTTAGCCTCACCGGTACTTCTTTTGTCCCTCAAGGTGATGCAGTTGTCATGCACTATCCATTGGAAAAGCGCGGCATTTTGTCTCGTGTGAGAGGAGAGATTGGCCTTAAAATTTACATCACTGATAATCCAACCATAAAATCCTCAATTCCGAGTCCTGTTGAGTCCATGCCAACGAATAATCACGCTGAAGTTCGTGGACCTAATGCAATGATGAATGGTTTGTCTAGTGACAGGGTTGAGTCCTCAAGACATACATTTAATCACCTCCCTAACCCAAACCATCACCGAAATCAGCATCAACAACATTCCAATAGCTATGCAGATACTCACTATGTAACGAAGTATGAAGCTGATGAAATGAAATCTGATCAACCACAACCTATGAAGCTAGTACACATGCATTCAGTTACATCCTTACAGCCGGTTGACTTTGCACTTAAAGAAACAAGTCCGTTTCTCGGTGGGGGGAGGGTTGTTGGCGGTCGTGTTGTTCATAAAGACAAGACCTCCAGTACATATGATCTCGTGGAAAGGATGTATTTTTTGTATGTCAGAGTTGTTAAGGCTCGTGAGCTTCCTTCCATGGATGTTACCGGGAGTCTTGATCCATTTGTTGAGGTGAGAATTGGAAACTACAGAGGTATTACCAAACACTTTGATAAGAATCAGCATCCTGAGTGGCATCAGGTTTTCGCATTTTCAAAGGAAAGGATGCAAGCATCTGTACTAGAAGTTGTGATCAAGGACAAGGATCTTATCAAAGATGATTTTGTAGGCATTGTGAGGTTTGACATCAATGAGGTTCCTTTAAGAGTTCCACCGGATAGTCCTTTGGCACCCGAGTGGTACCGTCTCAACGATAAGAAAGGTGAGAAAGTTAAAGGTGAGTTGATGCTAGCTGTTTGGATTGGTACTCAAGCAGATGAAGCCTTTTCGGATGCATGGCATTCAGATGCAGCTTCACCTGTCGACAGCTCTCCTGCTACTACAGCAGTGATACGTTCGAAGGTCTATCATGCTCCAAGGTTGTGGTACGTTCGTGTCAATGTTGTAGAAGCACAAGACTTGATTCCAACGGAGAAAAACCGTTTCCCGGATGCATATGTCAAAGTGCAGATAGGAAACCAGGTGCTGAAAACAAAGACAGTTCCAGCTAGAACTCTAAATCCACAATGGAATGAAGATCTTTTGTTTGTTGCTGCTGAGCCTTTTGAAGATCACATAATACTTTCGGTTGAAGATCGAGTTGGTCCGGGAAAAGATGAGATCATTGGGAGGGTTATCATACCACTAAACGCGGTGGAGAGGCGTGCGGATGATAGAACCATTCATTCTAGATGGTTCAACTTGGAAAAGCCTGTTGCCGTGGATGTTGATCAGCTGAAGAGAGAAAAGTTTGCAAGCAGAATTCAGCTACGTCTATGTCTAGATGGAGGATATCATGTTCTCGACGAATCAACTCATTACAGCAGCGATCTTCGCCCGACGGCAAAACAGTTATGGAGGCCACCAATTGGAGTTTTAGAACTTGGAGTGCTGAACGCCATAGGGCTCCACCCTATGAAAACAAGGGATGGTAGAGGCACTTCTGATACATACTGTGTAGCAAAATATGGTCACAAATGGGTTAGAACAAGAACACTTGTTGATAACTTGTCGCCAAAATACAATGAGCAATATACTTGGGAGGTCTTTGATCCTGCAACAGTCCTCACAGTAGGTGTCTTTGACAATGCTCAAATCAGTGGTGAAAAGGGTAATAACAAAGACTTGAAAATTGGGAAGGTGAGAATTCGCATATCGACTCTCGAAACAGGACGAATTTACACTCACTCATATCCATTGCTAGTTCTTCATCCAACTGGTGTTAAGAAAATGGGTGAACTTCACTTGGCAATAAGATTCTCATGCACCTCATTTGCAAACATGCTTTACCTATACTCAAAACCACTTCTTCCGAAAATGCACTATGTTAGGCCTTTCGCTGTAATGCAACTCGATATGCTACGTCACCAAGCAGTTAACATAGTGGCAGCGCGTCTGGGTCGAGCGGAACCACCACTTCGTAAAGAAGTTGTGGAATACATGTCAGATGTTGACTCACATCTATGGAGCATGCGCCGTAGCAAGGCGAATTTCTTTCGTGTGATGACAGTTTTTTCTGGTGTGTTTGCAGTTGGAAAGTGGTTAGGTGATATCTGCATGTGGATAAATCCTATTACAACAGTTCTTGTTCATGTCTTGTTTCTCATGTTGGTTTGCTTCCCGGAGTTGATCTTGCCTACACTTTTTCTCTACCTGTTCTTGATCGGCGTATGGAACTTCAGGTACCGAGCGAGGTATCCTCCTCACATGAACACAAGAATCTCACAGGCTGATGCAGTACATCCTGATGAGATGGATGAGGAATTTGATACTTTTCCAACAAGCAAAAACCCTGATCTTGTGAGAATGCGGTATGATCGTTTGAGGAGTGTGGCTGGTAGAATACAAACGGTTGTAGGCGATTTGGCTAGCCAGGGTGAGAGGATTCATGCAATGTTGAGCTGGAGAGATCCGCGTGCTACTTCTATATTCATTACTTTCTGTCTGGTATCTGCTTTGGTTCTATATGTTACTCCTTTTCAAGTTGTAGCTGGTTTAGCAGGTTTCTATTTCATGAGGCATCCGAGATTCCGAAACAGGCTTCCGTCTGCACCAATTAACTTCTTTCGACGTCTACCAGCAAGAACTGATAGTATGTTGTAG 3018 0.4301 MINLKLGVDVVGAHNLLPKDGEGSSNAFVELYFDGQKFRTTIKEKDLNPVWNESFYFNISDPSNLHYLTLEAYVHCHSKATNSSSFLGKVSLTGTSFVPQGDAVVMHYPLEKRGILSRVRGEIGLKIYITDNPTIKSSIPSPVESMPTNNHAEVRGPNAMMNGLSSDRVESSRHTFNHLPNPNHHRNQHQQHSNSYADTHYVTKYEADEMKSDQPQPMKLVHMHSVTSLQPVDFALKETSPFLGGGRVVGGRVVHKDKTSSTYDLVERMYFLYVRVVKARELPSMDVTGSLDPFVEVRIGNYRGITKHFDKNQHPEWHQVFAFSKERMQASVLEVVIKDKDLIKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLNDKKGEKVKGELMLAVWIGTQADEAFSDAWHSDAASPVDSSPATTAVIRSKVYHAPRLWYVRVNVVEAQDLIPTEKNRFPDAYVKVQIGNQVLKTKTVPARTLNPQWNEDLLFVAAEPFEDHIILSVEDRVGPGKDEIIGRVIIPLNAVERRADDRTIHSRWFNLEKPVAVDVDQLKREKFASRIQLRLCLDGGYHVLDESTHYSSDLRPTAKQLWRPPIGVLELGVLNAIGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNAQISGEKGNNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTSFANMLYLYSKPLLPKMHYVRPFAVMQLDMLRHQAVNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRVMTVFSGVFAVGKWLGDICMWINPITTVLVHVLFLMLVCFPELILPTLFLYLFLIGVWNFRYRARYPPHMNTRISQADAVHPDEMDEEFDTFPTSKNPDLVRMRYDRLRSVAGRIQTVVGDLASQGERIHAMLSWRDPRATSIFITFCLVSALVLYVTPFQVVAGLAGFYFMRHPRFRNRLPSAPINFFRRLPARTDSML* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3870 1005 CDD C2A_MCTP_PRT_plant 5 131 - -
Tpr2g3870 1005 Gene3D C2 domain 581 727 IPR035892 -
Tpr2g3870 1005 Gene3D C2 domain 252 393 IPR035892 -
Tpr2g3870 1005 Gene3D C2 domain 417 565 IPR035892 -
Tpr2g3870 1005 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 596 737 IPR035892 -
Tpr2g3870 1005 ProSiteProfiles C2 domain profile. 414 538 IPR000008 -
Tpr2g3870 1005 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 4 1005 - -
Tpr2g3870 1005 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 143 IPR035892 -
Tpr2g3870 1005 SMART C2_3c 435 533 IPR000008 -
Tpr2g3870 1005 SMART C2_3c 271 367 IPR000008 -
Tpr2g3870 1005 SMART C2_3c 5 106 IPR000008 -
Tpr2g3870 1005 SMART C2_3c 597 702 IPR000008 -
Tpr2g3870 1005 CDD C2D_MCTP_PRT_plant 597 722 - -
Tpr2g3870 1005 ProSiteProfiles C2 domain profile. 253 373 IPR000008 -
Tpr2g3870 1005 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 4 1005 - -
Tpr2g3870 1005 ProSiteProfiles C2 domain profile. 579 703 IPR000008 -
Tpr2g3870 1005 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 434 587 IPR035892 -
Tpr2g3870 1005 CDD C2B_MCTP_PRT_plant 271 395 - -
Tpr2g3870 1005 Gene3D C2 domain 2 130 IPR035892 -
Tpr2g3870 1005 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Tpr2g3870 1005 CDD C2C_MCTP_PRT_plant 435 585 - -
Tpr2g3870 1005 Pfam Plant phosphoribosyltransferase C-terminal 850 1005 IPR013583 -
Tpr2g3870 1005 Pfam C2 domain 5 96 IPR000008 -
Tpr2g3870 1005 Pfam C2 domain 434 540 IPR000008 -
Tpr2g3870 1005 Pfam C2 domain 597 705 IPR000008 -
Tpr2g3870 1005 Pfam C2 domain 272 366 IPR000008 -
Tpr2g3870 1005 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 270 409 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3870 Tpr-Chr2 41478736 41483489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3870 161 1005 Lipid Metabolism Gene Families AT4G11610 77.299 0.0 1407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3870 - - gmx:100777951 1764.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3870 2 41478736 41483489 Tpr2g3870 2 41478736 41483489 ECH