Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3844 ATGTGGAGTGCAAAGTTACCAAATTCCATGAATGATCAAGACCTAACTACAGAGCACAATGTGCCACCCGGTCGTATTAAGGCTATAAAATTTGATGTTTTAACTGGAGAAGATATAGAGAAGATCTCCACCTTGGAGATAAATGCACCTGGACAGGTCACTTGTTCTGATCTGGGACTTCCAAATTCGTCCTATGTGTGCACAACATGTGGTTCACATGATAGAAAGTCCTGTGATGGTCACTTTGGATCAATCAAGTTTCCCTTTACCATATTACATCCATACTTCATGGCAGAGATTGCAGAAATCTTGCAAAAGATTTGCCCTGCGTGTAAATCTATTCGACATGAATTACGGATCAAGCGTGCTAAATCACTCCTTGGATTCAATAATCAGCCGAGAGGTTGCAAATATTGTTCTGGTAATGGTATGGGTCGTTATCCTGCCATGAAATTCAGAGTTTCATCCAATGATTTCTTCAGGAGAACTGCAATTATTGTTGAAGTAAATGATATATCTTTAAATAAGAAAAGAAATTTGGGGCGAGGATTGCCAGCTGATTATTGGGATTTCATCCTTGGAGATGCTCAGCAAGATGAAAACCATGTAAATAGAAGGGTTTTATCACCTGTTCAGGTTGAGAATTTGTTGAGTGGTGTTGATCCGAACTTCATTGAAAAATTTATTCCAAGCATGGATTTGGTTGGTCTCAGTTGCTTCCTGGTGGCACCGAATTGTCATCGTGTGACAGAAGTTGCTCACCGAATGTGCGGGGGATATCCATTGAGTTTTGATAACAGGACCAGGGCTTGCAAGAAATTGGTTGATTTCAGGGGTACAGCAAATGAGTTAAGTGCTCGTGTTTTGGATTGCCTGAGGTTTTCCAAGATAAATCCTGATAGAACACCAATTAATATTTTTACTGAGTTGCAACAAAGAAGGGTTGGAGAAAATGCCTGCAATTCTTCTGGTTTAAGATGGATGAAAGATGTCGTTCTTGGAAAACGCAATGACTGTTCATTCCGTACCGTGGTTGTTGGCGATCCAGACCTCGAGCTTTGTGAAATTGGTATACCTTGTCAAATTGCAGAAGGTTTGCAGGTTTCTGAGTGCGTGAATAGGCAGAATAAACAAAATTTACTTTATTGTTGTGAGCTGCGTTTGTTAGAGAAGGGACAGATAAATGTTCGTAGAAAGGGTAATCCAGTTGTTCTGTATAAAAAAGAAGATTTACAGATAGGAGACATATTTTATCGGCCTCTTGTTGATGGAGACACAGTGTTGATAAATAGGCCTCCTTCCATACATCAACATTCTATGATTGCTTTCACGGTTAGGGTTCTTCCAATTACTTCTGTAGTTTCTATTAACCCACTCTGTTGTTCACCTCTTTGTGGGGATTTTGATGGTGATTGCCTTCATGGGTATATTCCACAATCTGTTGGTGCAAGAGTGGAGCTTAATGAGCTGGTTGCTTTGGATAGGCAACTGATTAATGGGCAAAGTGGGACAAATCTGCTTTCACTTTGTCAGGATAGTTTAACTGCTGCATATTTGCTGTTGGAAGACGGGGTCCGTTTGAATGTTTACCAAATGCAGCAGCTTCAAATGCTTTGCGATAGAAAATTAACGCCTCCTGCAATCGTAAAAGCTTCTTCAAGCAATACCTCGTTTTGGAGTGGCAAGCAATTGTTCAGCATGCTGTTGCCTTCTAGTTTTAAATATGATTTCCCTTCAAATGATGTTGTTGTTAGGGACGGGGAGCTGATATCTTGTTCCGAGGCTTCTGGGTGGTTACGTGATTCAGAGAACAATATTTTCCAAAGTCTTGTGGAACATTTTCAAGGGAAGACTTTGGATATATTGCATGGTGCACAGAAAACTCTTTGTGAGTGGTTGTCCATGACAGGGTTCAGTGTTTCCCTCTCAGATTTGTACCTTTCTTCCGATTCCTATGCGCGGAAAAACATGATGGAGGAAATCTCCTATGGCTTACGAGAATCAGAGAAGGCTTGTAATTTCAATCAGTTATTGGTAGATTATTATTGTGATTTTCTTTCTAGAAGTCTAGAAGAGAATGGAAAATGTATGACTGTGGACGTAGATCGTCTTAATTATGAAAGACAGTTATCTGCTGCTATAAGTCAAGCTTCAGTTGATGCTTTTAGACAAGTATTTCGCCATATTCAGAGTTTAGCAGATAAATATGCGTGCAAGGACAATACTTTCCTTGCTATGTTTAAGGCCGGAAGCAAGGGTAATTTACTGAAATTAGTGCAACATTCCATGTGTCTTGGGCTGCAACATTCTCTGGTCCGATTGTCATACAGAATTCCCCGCGAACTCTCATGTGCTGGTTGGAACAGTGAAAAGGGGAATCATTCGATGAAGATGTTTTCTGATACTCATGAACCAGGCCAGTCTTTCATTGCTCATGCTGTGGTTGAAAGCTCTTTTCTTACAGGGTTGAATCCACTTGAATGTTTTGTTCATTCGGTGACAAATCGTGATAGCTCTTTCAGTGACAATGCAGACCTTCCTGGGACATTGACCAGAAGACTTATGTTTTTCATGCGTGATTTGTATGATGCATATGATGGATCAGTGAGAAACTTATATGGTAATCAACTTATTCAGTTTTCTTATGATGCTGAAGAGGATTCAGCTTGTGATAGCTATTGTCGAGAGGATGTTATAGGCGGTGAACCAGTCGGAGCGCTTTCTGCTTGTGCAGTTTCTGAGGCTGCATACAGTGCTTTGAGTCAACCTATTAGTCTACTTGAAGCATCACCTTTGCTGAATTTAAAAAATGTTTTGGAGTGTGGTTCAAGGAAAAGAGGGGGTGACCAGACCTTGTCCTTATATTTGTCTGACAAAATTGGTAAAACGAAAAATGGGTTTGAGTATGCATCTCTAGAAATTAAGAACTATTTGGAAAGATTGATGTTCTCAGACATTGTTTCTACTGTCATGATAATATTCAGTCCACAGTCTTGTGATCTCGGAAAATACAGTCCTTGGGTGTGCCATTTTCATTTAGACAAGGAAAATGTAACAAGAGGAAATTTCAGAGTGCATTCTATCATCGAGTCTATTTACCAGGGATATGACTCCTTAAGAAAAGACTCAAAATTCACTCTTCCCAGTTTGAAAATATCAAGCAAGAAATGTTGTGTAGATGGCATGGCCAAGGAAGGTGGACAAACCTCTGATAAGGAAAAAGACAGCCAAGATTGCATCACCGTAACAATTGTTGAAGATTCTAAGAATTCTCTACAACTGGATGCTGTTCGGAATATAATGATACCTATGCTTCTGCGAACAGCTATAAAAGGATTTTCGGAGATCAAGAAGATTGACATTCTCTGGAAGGATCGGTCAAAAGTATCAAATTCTTTTCATGGTTCTTCTGGTGAACTATACTTGAGGGTTACAATGGCCAGCGACAATGACAGCGGTACATTCTGGGGTTCACTGATAAATCATTGTCACAGAATAATGCCGTTGATTGACTGGACACGAAGTCATCCTGATAACATTCACCATTTCTGCTCAGCCTTTGGAATCGATGCAGGGTGGCAGCATTATTTGCATAATTTATCATCTGCAACATCTGATACTGGCAAGTCGATCCTTCCTAAGCATCTGCGCCTTGTTGCCAATAGTCTTTCAGCTAGTGGAGAGTTTGTGGGATTAAATGCTAAAGGCATGGCACGGCAAAGAAAACATGCATCTGTTTCATCGCCCTTCGTGCAAGCATGCTTTTCTAATCCTGGCAGTTCCTTTTTAAAAGCTGCGAAGTCTGGAGTCATGGATAATCTGCAGGGCAATCTAGATGCATTGGCTTGGGGAAACTGTCTGCCCATGGGTACAAGTGGACAGTTTGATATCATATACTCAGAGAAGGTACAAGAGCTTGATAAGTCTGTAGATGTGTATGGCTTGCTAGAAACCAGTTTTGACCAAATGGAACAAGAGATTAATACCCTTCAATCTCAGAAATATTCATCCAGCAACTGCAACTCAGACTTTAGGTATAAACAAGGTGGTTACACCCGGAAACAGCCTAAGCAGTGGAAAAGCGCTGTAAGAAGTTTCATAACTGTCAATGATATTCTGAAGCTTACTACTGCATCAAGCTTCATACTTAAAAAGTATGCAATTGATGAGATACTTAGTGAGAAGGACAAGTTAACCATAATGAAGGTTTTGCATTTTCATCCATGTAAAAATGAGAAGTTTGGCTCTGGACCACAAGACATAAAGGTTGGATTGCATCCCATACATCCAGATAGCCGTTGTTTTTTTATAATTCGAAAGGATGGGACTGTTGAAGACTTTTCCTACCGGAAATGCATTATTGGTGCTCTTGATATTGTTGATCCGGAACAGTCAAAGATCCAAAAGAGTAAATGGTCTAATATTGACATGGAAGCTAAGAAATGGTCTGGAAGTGATGACATGGAAGATAAAAAATGGTCGGAAAATTCTGACAAAGAATATAAAAAATGGTCAAGAAATTATGACCAGGAAGCTAAGAAATGGTCAGCCAATGATGACATGGAAGTGACTGGCATTTGA 4581 0.3999 MWSAKLPNSMNDQDLTTEHNVPPGRIKAIKFDVLTGEDIEKISTLEINAPGQVTCSDLGLPNSSYVCTTCGSHDRKSCDGHFGSIKFPFTILHPYFMAEIAEILQKICPACKSIRHELRIKRAKSLLGFNNQPRGCKYCSGNGMGRYPAMKFRVSSNDFFRRTAIIVEVNDISLNKKRNLGRGLPADYWDFILGDAQQDENHVNRRVLSPVQVENLLSGVDPNFIEKFIPSMDLVGLSCFLVAPNCHRVTEVAHRMCGGYPLSFDNRTRACKKLVDFRGTANELSARVLDCLRFSKINPDRTPINIFTELQQRRVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLELCEIGIPCQIAEGLQVSECVNRQNKQNLLYCCELRLLEKGQINVRRKGNPVVLYKKEDLQIGDIFYRPLVDGDTVLINRPPSIHQHSMIAFTVRVLPITSVVSINPLCCSPLCGDFDGDCLHGYIPQSVGARVELNELVALDRQLINGQSGTNLLSLCQDSLTAAYLLLEDGVRLNVYQMQQLQMLCDRKLTPPAIVKASSSNTSFWSGKQLFSMLLPSSFKYDFPSNDVVVRDGELISCSEASGWLRDSENNIFQSLVEHFQGKTLDILHGAQKTLCEWLSMTGFSVSLSDLYLSSDSYARKNMMEEISYGLRESEKACNFNQLLVDYYCDFLSRSLEENGKCMTVDVDRLNYERQLSAAISQASVDAFRQVFRHIQSLADKYACKDNTFLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRIPRELSCAGWNSEKGNHSMKMFSDTHEPGQSFIAHAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDLYDAYDGSVRNLYGNQLIQFSYDAEEDSACDSYCREDVIGGEPVGALSACAVSEAAYSALSQPISLLEASPLLNLKNVLECGSRKRGGDQTLSLYLSDKIGKTKNGFEYASLEIKNYLERLMFSDIVSTVMIIFSPQSCDLGKYSPWVCHFHLDKENVTRGNFRVHSIIESIYQGYDSLRKDSKFTLPSLKISSKKCCVDGMAKEGGQTSDKEKDSQDCITVTIVEDSKNSLQLDAVRNIMIPMLLRTAIKGFSEIKKIDILWKDRSKVSNSFHGSSGELYLRVTMASDNDSGTFWGSLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYLHNLSSATSDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPGSSFLKAAKSGVMDNLQGNLDALAWGNCLPMGTSGQFDIIYSEKVQELDKSVDVYGLLETSFDQMEQEINTLQSQKYSSSNCNSDFRYKQGGYTRKQPKQWKSAVRSFITVNDILKLTTASSFILKKYAIDEILSEKDKLTIMKVLHFHPCKNEKFGSGPQDIKVGLHPIHPDSRCFFIIRKDGTVEDFSYRKCIIGALDIVDPEQSKIQKSKWSNIDMEAKKWSGSDDMEDKKWSENSDKEYKKWSRNYDQEAKKWSANDDMEVTGI* 1527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3844 1526 Gene3D - 1362 1455 - -
Tpr2g3844 1526 Gene3D - 650 823 IPR038120 -
Tpr2g3844 1526 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 13 1377 - -
Tpr2g3844 1526 Coils Coil 1313 1333 - -
Tpr2g3844 1526 Pfam RNA polymerase Rpb1, domain 4 713 771 IPR007083 GO:0003677|GO:0003899|GO:0006351
Tpr2g3844 1526 Pfam RNA polymerase Rpb1, domain 2 334 491 IPR000722 GO:0003677|GO:0003899|GO:0006351
Tpr2g3844 1526 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 20 1301 - -
Tpr2g3844 1526 Gene3D - 330 500 - -
Tpr2g3844 1526 Gene3D RNA polymerase Rpb1, domain 3 501 647 IPR042102 -
Tpr2g3844 1526 Pfam Protein of unknown function (DUF3223) 1382 1453 - -
Tpr2g3844 1526 PANTHER DNA-DIRECTED RNA POLYMERASE 13 1377 IPR045867 GO:0003899|GO:0006351
Tpr2g3844 1526 Pfam RNA polymerase Rpb1, domain 3 497 645 IPR007066 GO:0003677|GO:0003899|GO:0006351
Tpr2g3844 1526 CDD RNAP_IV_RPD1_N 34 870 IPR040403 -
Tpr2g3844 1526 SMART rpolaneu7 233 521 IPR006592 GO:0003677|GO:0003899|GO:0006351
Tpr2g3844 1526 Gene3D RNA polymerase II, clamp domain 16 132 IPR044893 -
Tpr2g3844 1526 Gene3D RNA polymerase ii 367 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3844 Tpr-Chr2 41226320 41240600 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3844 K16250 - gmx:100796185 2121.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3844 2 41226320 41240600 Tpr2g3844 2 41226320 41240600 ECH