Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3838 ATGGCAGCAGAAACACCAAAGAATGTTGGAATTCTCGCTCTTGATATCTATTTCCCTCCTAATGCTGTTCAACAGGAAGCATTGGAGGCTCATGATGGTGCCAGTAAAGGGAAATATACAATTGGACTTGGACAAGATTGCATGTCATTTTGTTCAGATGTAGAAGATGTCATTTCAATGAGTTTGACAGTGGTTTCTACCCTTCTTGAGAAGTATGGGATCGATCCTAAACAAATTGGTCGTCTTGAAGTAGGCAGTGAGACTGTGATTGACAAAAGCAAATCCATCAAGACATTCTTGATGCAGATCTTTGAGAAACATGGAAATACTGACATTGAAGGTGTTGATTCAACTAATGCATGCTATGGAGGAACTGCCGCTTTGTTCAACTGTGTCAACTGGGTGGAGAGCAATTCATGGGATGGACGATATGGACTTGTTGTCTGTACCGACAGTGCAGTCTATGCTGAAGGTCCTGCTCGACCTACCGGAGGAGCTGCTGCTATTGCTATGCTAATTGGTCCTGATGCTCCTATTGCTTTTGAAAGCAAATTGAGGGGAAGTCATATGTCCCATGTTTATGATTTTTACAAACCTGACCTTGCTAGTGAATATCCGGTTGTCGACGGAAAGCTTTCACAAACATGTTACCTCATGGCTCTTGATACTTGCTATAAAAATTTCTGTCAAAAATATGAGAAACACGAGGGAAAACCATTTGCTCTTTCTGATGCGGATTACTTTGTATTCCACTCTCCTTATAACAAGCTTGTGCAAAAAAGTTTTGCTCGTTTGGTCTTCAGTGACTTCTTGAGGAATCCCAGCTCTAAGGATGAGGTTACCAAAGAAAAGCTAGGACCTTTTGCAACTTTATCGGATGACGAGAGCTACCAAAGCCGGGATCTTGAAAAGGCATCCCAGCAAGTTGCAAAGCCTCTATACGATGAGAAGGTACAACCATCTACTTTGATACCAAAGCAAGTTGGCAACATGTACACCGCGTCCATCTATGCAGCATTTGCATCCCTTATTCACAACAAACATAGCTCATTGGAAGGGAAGAGGGTGATATTATTCTCATACGGAAGTGGCTTGACTTCCACAATGTTTTCCTTGCAATTATGTGAAACTAAACATCCGTTTAGCTTGTCCAACATTGCCCAAGTGATGGATGTTGCTGAAAAGTTGAAGTCAAGGCAAGAGTTCCCCCCAGAGAAGTTTATTGAAACACTGAAGCTAATGGAACATAGGTATGGTGCCAAGGATTATGTAACAAGCAAGGACAGTAGCCTTTTAGCTCCAGGCACATTCTATCTCACCGAAGTTGATACCATGTATCGTAGATTCTATGCAACGAAATCTAGTGAAAGCAATTCGACTCATGCAGTCAACGGTGTGATTTCCAATGGTCATTGA 1416 0.4195 MAAETPKNVGILALDIYFPPNAVQQEALEAHDGASKGKYTIGLGQDCMSFCSDVEDVISMSLTVVSTLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKHGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIAFESKLRGSHMSHVYDFYKPDLASEYPVVDGKLSQTCYLMALDTCYKNFCQKYEKHEGKPFALSDADYFVFHSPYNKLVQKSFARLVFSDFLRNPSSKDEVTKEKLGPFATLSDDESYQSRDLEKASQQVAKPLYDEKVQPSTLIPKQVGNMYTASIYAAFASLIHNKHSSLEGKRVILFSYGSGLTSTMFSLQLCETKHPFSLSNIAQVMDVAEKLKSRQEFPPEKFIETLKLMEHRYGAKDYVTSKDSSLLAPGTFYLTEVDTMYRRFYATKSSESNSTHAVNGVISNGH* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3838 471 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 6 453 IPR010122 GO:0004421|GO:0008299
Tpr2g3838 471 SUPERFAMILY Thiolase-like 8 176 IPR016039 GO:0016746
Tpr2g3838 471 CDD init_cond_enzymes 8 372 - -
Tpr2g3838 471 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 6 178 IPR013528 -
Tpr2g3838 471 Gene3D - 4 455 IPR016039 GO:0016746
Tpr2g3838 471 SUPERFAMILY Thiolase-like 179 451 IPR016039 GO:0016746
Tpr2g3838 471 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 179 453 IPR013746 GO:0004421|GO:0006084|GO:0010142
Tpr2g3838 471 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 109 124 IPR000590 GO:0004421|GO:0008299
Tpr2g3838 471 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3838 Tpr-Chr2 41145757 41150887 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3838 K01641 - gmx:100788028 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3838 2 41145757 41150887 Tpr2g3838 2 41145757 41150887 ECH