Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3801 ATGGGTAAAGATCTGAGCGACGATCAAGTTTCTTCAATGAAAGAAGCTTTCACTCTATTCGACACCGACAACGACGGCAAGATCGCACCATCGGAGCTCGGAATCCTCATGCGATCTCTCGGAGGAAACCCGACCCAAGCTCAACTCAAATCAATCGTTGCCGAAGAGAATCTCACATCACCGTTCGATTTCCCTCGGTTTCTGGATCTCATGTCCAAACACATGAAACCTGAACCGTTCGATCGTCAACTTCGCGACGCATTCAAGGTTCTCGATAAGGATGCTTCCGGTTCCGTTTCCGTTAAGGAGCTTCGTCATATTCTCACTAGCATCGGTGAGAAACTCGAGACTGCTGAGTTTGATGAATGGATCAGGGAAGTTGATGTTGGTTCCGATGGGAATATTCGTTATGAGGATTTCATCGCTAGAATGCTTGCTAAGTGA 444 0.4707 MGKDLSDDQVSSMKEAFTLFDTDNDGKIAPSELGILMRSLGGNPTQAQLKSIVAEENLTSPFDFPRFLDLMSKHMKPEPFDRQLRDAFKVLDKDASGSVSVKELRHILTSIGEKLETAEFDEWIREVDVGSDGNIRYEDFIARMLAK* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3801 147 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Tpr2g3801 147 Gene3D - 79 147 - -
Tpr2g3801 147 PANTHER CALCIUM-BINDING PROTEIN CML13-RELATED 1 147 - -
Tpr2g3801 147 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
Tpr2g3801 147 Pfam EF-hand domain pair 82 144 IPR002048 GO:0005509
Tpr2g3801 147 Pfam EF hand 13 40 IPR002048 GO:0005509
Tpr2g3801 147 SUPERFAMILY EF-hand 5 144 IPR011992 -
Tpr2g3801 147 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Tpr2g3801 147 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Tpr2g3801 147 CDD EFh 14 109 IPR002048 GO:0005509
Tpr2g3801 147 CDD EFh 83 144 IPR002048 GO:0005509
Tpr2g3801 147 ProSiteProfiles EF-hand calcium-binding domain profile. 115 147 IPR002048 GO:0005509
Tpr2g3801 147 SMART efh_1 12 40 IPR002048 GO:0005509
Tpr2g3801 147 SMART efh_1 83 111 IPR002048 GO:0005509
Tpr2g3801 147 SMART efh_1 119 147 IPR002048 GO:0005509
Tpr2g3801 147 Gene3D - 3 78 - -
Tpr2g3801 147 PANTHER CALCIUM BINDING PROTEIN 1 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3801 Tpr-Chr2 40887616 40888478 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3801 1 147 EF-hand Containing Proteins AT1G12310 85.135 2.62e-89 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3801 K13448 - zju:107420771 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3801 2 40887616 40888478 Tpr2g3801 2 40887616 40888478 ECH