Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3779 ATGAGTACTCCGGAGACGAAAGCCGAAGATGATAGAGATATTGTAATAACAAAAAGTGGTAAAAAAGATGAATCTTCTTCTTCTAGTGTTCAGAGATTGAAGTTCAAATCTGGTAGTAATAGCAAGAAAAAATTACTTCATCCTCCGATTGAAACGCATTGGGATCTTCCTACACAAAAAGGAAAGAAAAGAACATCATTCTCCATAAAATCAATGTTGTCTTATCCACTCATGAAACTTGGAAGGAGTAAAAGTATTGAAATGATTCTAGAAGGAACTCATGATCCAAATGATGAAAGCATTGTTCAGAATTTCCGCGAAATGCTTTCTCGTGAGGGTTTATTGCCGCCAAAGCATAATGATTATCACACTCTTCTAAGGTTTCTGCGGATGAATGATTTTGATATGACAATTTCCAAAGAGATGTTTCTCAATTATCTCAAATGGCGAAAGGAATTTCGAGTCGATATGATTCATAAGGAATTCAAATTCACAGAATACACAGAAGTGAAGAAATGCTATCCACATGGATACCATGGAGTTGATAGATTTGGAAGACCTGTGTATATTGAGAGAATTGGGATGATAGATATTAACAAACTATGGCAAGTAACCACAAATGAAAGGTTTATAAAGTATCATGTGTCAGAACAAGAGAAAACATTACAAGTAAGATATCCTGCATGTTCATTAGCAGCTAAAAGACACATAGCTTCCACCACAAGTATCTTGGATGTAAATGGAATAGGAATGTCTAATTTCTCAAAGCCTGCAAGATACATCTTTATGGAAATTCAGAAGATTGATAGCAGTTATTATCCTGAGACTTTAAATAAACTCTTCATTGTTAATGCTGGTTCTGGGTTTAAGATGTTGTGGAAAGCGGTGAAGGCATTTTTAGGCGAACGCACAGTAGCGAAAATTCAAGTTTTGGGTTCGAATTATCTCAATGTGTTGCTTGAGGCTATTGATCCAAGTAACTTGCCAACTTTTTTGGGTGGCAATTGCACATGTTCTGATGCTGGAGGTTGCTTGATGAGTGATCAAGGTCCATGGAAAAATTCAGAATTGTTAGAAATGATTCAGACAGTTTCTGTAACAGAAGAAATTGATGGTGCGTGCGAATCCAACAATTCGGTCTCAGACGGATCTTTGATGCACAAAAAGATTGACATGCAAAACAAAGATGATGTTAGTAGTAGTATGAGTTCGGCACTTGAGGAGACAACATACTCTTCATGTAGGTTAGGATTACAAAAAATTGATGGGCTTGAAACTAGTCTTGGAGATATCAAGAATCAGAAAATCAAGACATTGGAAGATGCACTTCAAGACACCAAGATGGCATTGAAAGAACTTGCACAACACATAGAACAACAAAAAATATGA 1389 0.3621 MSTPETKAEDDRDIVITKSGKKDESSSSSVQRLKFKSGSNSKKKLLHPPIETHWDLPTQKGKKRTSFSIKSMLSYPLMKLGRSKSIEMILEGTHDPNDESIVQNFREMLSREGLLPPKHNDYHTLLRFLRMNDFDMTISKEMFLNYLKWRKEFRVDMIHKEFKFTEYTEVKKCYPHGYHGVDRFGRPVYIERIGMIDINKLWQVTTNERFIKYHVSEQEKTLQVRYPACSLAAKRHIASTTSILDVNGIGMSNFSKPARYIFMEIQKIDSSYYPETLNKLFIVNAGSGFKMLWKAVKAFLGERTVAKIQVLGSNYLNVLLEAIDPSNLPTFLGGNCTCSDAGGCLMSDQGPWKNSELLEMIQTVSVTEEIDGACESNNSVSDGSLMHKKIDMQNKDDVSSSMSSALEETTYSSCRLGLQKIDGLETSLGDIKNQKIKTLEDALQDTKMALKELAQHIEQQKI* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3779 462 CDD SEC14 167 335 IPR001251 -
Tpr2g3779 462 SUPERFAMILY CRAL/TRIO N-terminal domain 92 161 IPR036273 -
Tpr2g3779 462 Coils Coil 436 462 - -
Tpr2g3779 462 MobiDBLite consensus disorder prediction 1 42 - -
Tpr2g3779 462 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 166 340 IPR001251 -
Tpr2g3779 462 Pfam CRAL/TRIO domain 174 334 IPR001251 -
Tpr2g3779 462 Gene3D - 81 153 - -
Tpr2g3779 462 PRINTS Cellular retinaldehyde-binding protein signature 124 146 - -
Tpr2g3779 462 PRINTS Cellular retinaldehyde-binding protein signature 293 312 - -
Tpr2g3779 462 PRINTS Cellular retinaldehyde-binding protein signature 326 335 - -
Tpr2g3779 462 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 39 460 - -
Tpr2g3779 462 SUPERFAMILY CRAL/TRIO domain 166 360 IPR036865 -
Tpr2g3779 462 SMART sec14_4 166 337 IPR001251 -
Tpr2g3779 462 Gene3D - 154 366 IPR036865 -
Tpr2g3779 462 SMART CRAL_TRIO_N_2 121 146 IPR011074 -
Tpr2g3779 462 MobiDBLite consensus disorder prediction 1 29 - -
Tpr2g3779 462 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH11 39 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3779 Tpr-Chr2 40726958 40730512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3779 125 331 Acyl Lipid Metabolism Gene Families AT5G47730 29.665 9.25e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3779 - - gmx:100797170 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3779 2 40726958 40730512 Tpr2g3779 2 40726958 40730512 ECH