Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3475 ATGATGGTGGAAACCTCAACATTAGGTCGGTTCCACCACCAAAGACTCGACTTTAAACGCTGCGTTCCGGCATTCATAACCTCACACAAGACCCTCTTTTTGGTTCTATGGATCGCAGCTTTTTCGTCGGTTTTTATTTGGCAAAGAAACATGGTGGTTGGTGGGTTTTTGTTTTTCGGACGAGTTTCGGTTAGACCGATTCCCAAGATGAGACCCGTGGTTTTCAATTTGACGGATTTTGGTGGTGTGGGTGATGGGGTTACTCTCAATACTGAAGCTTTTGAAAGAGCTGTTTCTGCTATATCTAAATTGGGGAAGAAAGGTGGGGCCCAGCTCAATGTTCCTCCTGGTCGTTGGCTCACTGCACCGTTCAATCTTACCAGCCATATCACTCTTTTTCTAGCTCAAGATTCTGTTATTCTTGGCATTGATGATGAGAAGTATTGGCCACTCATGCCTCCGTTGCCTTCATATGGGTATGGAAGGGAGCGTCCTGGGCCTCGATATGGAAGTTTGATTCATGGTCAGAATCTTAAAGATGTTGTGATAACAGGGCATAATGGCACCATAAATGGACAAGGACAAGCATGGTGGAAAAAATTTCGCCAGAAGCGTCTCAACTACACAAGGGGGCCACTTGTTCAGATCATGTGGTCTAGTGACATTGTAATCACTAATATTACTCTACGTGACTCTCCTTTTTGGACATTTCATCCATATGACTGCAAAAACATTACAGTAAAAGGTGTTACAATTTTGGCTCCTGTAATTGAAGCTCCAAACACTGACGGCATAGATCCTGACTCTTGCGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGAGATGATGCAATTGCTATAAAGAGTGGTTGGGATCAATATGGAATTGCTTATGCAAGGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTTCGCTCTATGGTCAGTGCTGGTATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAACATCACAGTGGAGAATCTTCTTGTATGGGATTCTAGGCGTGGTGTGAGGATAAAGACTGCACCTGGGCGAGGGGGATATGTGCGACAAATAACTTATCGGAATATAACGTTTGAGAATGTCCGTGTTGGAATTGTGATGAAGACAGATTACAATGAACACCCTGATGACGGCTATGACCCTACAGCACTTCCAGATATAAGAGACATTAGCTTCACCAGTATCTATGGCCATGGAGTTCGTGTGCCGGTACGTATTCACGGTAGCGAAGAGATTCCTGTGAGAAATGTAACTTTTCGTGAAATGTCAGTTGGATTAACCTACAAGAAGAAACACATATTTCAATGTGCATTTGTACACGGCCGCGTAATAGGGACCATTTTCCCATCTCCATGCGAGAACCTTGATCGGTACAATGAGCAAGGACAGCTGGTTAAACATTCCATGTCCCAGAATGTAACAGATATAGATTATGATTTTTGA 1482 0.4352 MMVETSTLGRFHHQRLDFKRCVPAFITSHKTLFLVLWIAAFSSVFIWQRNMVVGGFLFFGRVSVRPIPKMRPVVFNLTDFGGVGDGVTLNTEAFERAVSAISKLGKKGGAQLNVPPGRWLTAPFNLTSHITLFLAQDSVILGIDDEKYWPLMPPLPSYGYGRERPGPRYGSLIHGQNLKDVVITGHNGTINGQGQAWWKKFRQKRLNYTRGPLVQIMWSSDIVITNITLRDSPFWTFHPYDCKNITVKGVTILAPVIEAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYARPSMNIMIRNLVVRSMVSAGISIGSEMSGGVSNITVENLLVWDSRRGVRIKTAPGRGGYVRQITYRNITFENVRVGIVMKTDYNEHPDDGYDPTALPDIRDISFTSIYGHGVRVPVRIHGSEEIPVRNVTFREMSVGLTYKKKHIFQCAFVHGRVIGTIFPSPCENLDRYNEQGQLVKHSMSQNVTDIDYDF* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3475 493 Pfam Glycosyl hydrolases family 28 170 453 IPR000743 GO:0004650|GO:0005975
Tpr2g3475 493 SUPERFAMILY Pectin lyase-like 65 466 IPR011050 -
Tpr2g3475 493 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 23 491 - -
Tpr2g3475 493 SMART pbh1 270 291 IPR006626 -
Tpr2g3475 493 SMART pbh1 395 417 IPR006626 -
Tpr2g3475 493 SMART pbh1 332 353 IPR006626 -
Tpr2g3475 493 SMART pbh1 304 326 IPR006626 -
Tpr2g3475 493 SMART pbh1 242 269 IPR006626 -
Tpr2g3475 493 SMART pbh1 361 382 IPR006626 -
Tpr2g3475 493 Gene3D - 63 454 IPR012334 -
Tpr2g3475 493 PANTHER PECTIN LYASE-RELATED 23 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3475 Tpr-Chr2 38082946 38087569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3475 10 492 Glycoside Hydrolase AT1G19170 74.747 0.0 777
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3475 - - gmx:100818529 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3475 2 38082946 38087569 Tpr2g3475 2 38082946 38087569 ECH
Tpr2g3475 2 38082946 38087569 Tpr5g1052 5 20930805 20943609 PCT